PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_02.2269

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 311aa MW: 34060.6 Da PI: 8.5721

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_02.2269	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.8	1.5e-16	129	175	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq evm.model.AsparagusV1_02.2269 129 VHNLSEKRRRDRINERMRALQELIPNC-----NKTDKASMLDEAIEYLKSLQ 175 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MSLPKPPKEG ITVDESKVIC EGESSRKNNK YNTGNADSRS PERVQSSSFA ASAALPEKRN 60 EAVVVSSCAS LSSSEDAESN DNKHRGKRKH QEGEESGYHS EDLEYESIEL KKSLPVQGKS 120 KKRSRAAEVH NLSEKRRRDR INERMRALQE LIPNCNKTDK ASMLDEAIEY LKSLQMQLQI 180 MAMRSGLCMP PMMMQHMRAP TMAPMGIGMG MGMGLSYGMG MYDVNVSRGC SFIPVQGPQF 240 PCSSIPGSQG VHPSPAGSNN FQMFGIPGTG FPVPLPYRPP STTTEDAKRS PDATMTVGNQ 300 HEQNKTLEKT *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	138	KKRSRAAEVHNLSEKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-40	bHLH family protein