PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_02.2062 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 162aa MW: 17958.6 Da PI: 9.9414 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.5 | 4.9e-08 | 19 | 65 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + + Er RRd++ + + L++++P+++ ++ + ++ +++ YIksL+ evm.model.AsparagusV1_02.2062 19 ALQLERSRRDKMAEFYTVLQSMVPNLF----PRATRTRVVDETISYIKSLE 65 5678*********************84....89****************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 162 aa Download sequence |
MKEDGSEAAH PASLRKNEAL QLERSRRDKM AEFYTVLQSM VPNLFPRATR TRVVDETISY 60 IKSLEGVVTA LDSQKRAKKL HRRRNSSITI TVSNRTAFFA LRVAPGHGRF ARVIEVFEKH 120 KAEVLAATVV ASEDGCTDVT VTALLDGEES AERIKAELMT L* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49770.1 | 2e-09 | bHLH family protein |