PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_02.1522

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 565aa MW: 61566.6 Da PI: 6.7038

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_02.1522	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.3	1.3e-08	369	416	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq evm.model.AsparagusV1_02.1522 369 SHSLAERVRREKISERMKFLQDLVPGC----NKVIGKAVMLDEIINYVQSLQ 416 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence
MERDGSFSSF NWQSNSHNSS LPIVEMNGSN SDGNANMGDQ SSGFLNLNWD QSSTEQTANF 60 ESALSSLVSS PTSSNPNPNP IPSPTPDSVV IRELIGRLGS ICSNNRNNNN NRGEEQSTNT 120 SCYSTPLNSP PKLNLLSMMD HPQLQLPRPS KTSHNPIAFN ADPGFADRAA RFSCFGATRS 180 NYAQFGTQEP GKLSRESSSQ SLNGMATSYN GKDDGVGGGQ LENDVMLMMM MRSGSGNNNS 240 QQESSPPSGS VAIVKKRKSS TASSNKGSNS GGSRAKEASH PNSSKGAEDN SNSKRSRSLS 300 VAVEARANNR DDDAQKTQKA INSTESAQKQ EKDDKDKDRD KENNNEKLQE PPKQDYIHVR 360 ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVIG KAVMLDEIIN YVQSLQRQVE 420 FLSMKLATVN PRLDFSMDRL LHKDMNQSSY PLEVASTGFS YANHTKGQEH APPLQSTCFM 480 ASNGLETQCS VNNSLDSNSL LSRCLSMHLP PLDSFTDAVP ASQLGAFWED DLQSVVQMGL 540 GQIQEATFSS HSFQGPLLHK PHEN*

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence

MERDGSFSSF NWQSNSHNSS LPIVEMNGSN SDGNANMGDQ SSGFLNLNWD QSSTEQTANF  60
ESALSSLVSS PTSSNPNPNP IPSPTPDSVV IRELIGRLGS ICSNNRNNNN NRGEEQSTNT  120
SCYSTPLNSP PKLNLLSMMD HPQLQLPRPS KTSHNPIAFN ADPGFADRAA RFSCFGATRS  180
NYAQFGTQEP GKLSRESSSQ SLNGMATSYN GKDDGVGGGQ LENDVMLMMM MRSGSGNNNS  240
QQESSPPSGS VAIVKKRKSS TASSNKGSNS GGSRAKEASH PNSSKGAEDN SNSKRSRSLS  300
VAVEARANNR DDDAQKTQKA INSTESAQKQ EKDDKDKDRD KENNNEKLQE PPKQDYIHVR  360
ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVIG KAVMLDEIIN YVQSLQRQVE  420
FLSMKLATVN PRLDFSMDRL LHKDMNQSSY PLEVASTGFS YANHTKGQEH APPLQSTCFM  480
ASNGLETQCS VNNSLDSNSL LSRCLSMHLP PLDSFTDAVP ASQLGAFWED DLQSVVQMGL  540
GQIQEATFSS HSFQGPLLHK PHEN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-58	bHLH family protein