PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_02.1315

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 552aa MW: 59973.6 Da PI: 4.8126

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_02.1315	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.1	4.2e-18	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l evm.model.AsparagusV1_02.1315 42 KGPWTSAEDAILVEYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 89 79******************************************9986 PP
2	Myb_DNA-binding	50	7e-16	95	138	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E++ ++++++++G++ W++ a++++ gRt++++k++w++ evm.model.AsparagusV1_02.1315 95 KGAFTPDEEKTIIELHARMGNK-WARMAAHLP-GRTDNEIKNYWNT 138 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MSDISNESDM KMLPRDHVGS PSIDEGSSGG SLAAGGGSGL KKGPWTSAED AILVEYVKKH 60 GEGNWNAVQK HSGLSRCGKS CRLRWANHLR PNLKKGAFTP DEEKTIIELH ARMGNKWARM 120 AAHLPGRTDN EIKNYWNTRI KRRQRAGLPV YPSDFSFPAS DENQQGPTVG DFSSISKIQN 180 ESPQGNCYNI TDIIFDDLKA SYTPRFLPDI SLSNVLSQGF GSLSYGFTTQ PMDCKPFRGN 240 ETLFSFPASF ENFSDDPSQK IDLTLGTSYP YDPDPIIKDV APYEGAINGS HALMNGNYST 300 SKSLSGTVKS ELPSLQFTET DPSFWFAYDS SPPSEAVDTY IQSASAVSMQ SECSSPRNNG 360 LLEDVLHESH AMHSGKKVPY EKCSNSSVMT PCDVMDSSAN NFCEDTAFEH CDPISPLSCS 420 AASVFNEYTP PISSSSLDEL PPPRGPSGSD IILPSAEDVS TPNPLGGKIK PKPEFLRPDA 480 ILGSAWLLES SQMAKDHTDM NNAIATLLGD ECCSEHKPLT TETSVSFTGA LGLDSYPWNN 540 MPRVCQISEH P*

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MSDISNESDM KMLPRDHVGS PSIDEGSSGG SLAAGGGSGL KKGPWTSAED AILVEYVKKH  60
GEGNWNAVQK HSGLSRCGKS CRLRWANHLR PNLKKGAFTP DEEKTIIELH ARMGNKWARM  120
AAHLPGRTDN EIKNYWNTRI KRRQRAGLPV YPSDFSFPAS DENQQGPTVG DFSSISKIQN  180
ESPQGNCYNI TDIIFDDLKA SYTPRFLPDI SLSNVLSQGF GSLSYGFTTQ PMDCKPFRGN  240
ETLFSFPASF ENFSDDPSQK IDLTLGTSYP YDPDPIIKDV APYEGAINGS HALMNGNYST  300
SKSLSGTVKS ELPSLQFTET DPSFWFAYDS SPPSEAVDTY IQSASAVSMQ SECSSPRNNG  360
LLEDVLHESH AMHSGKKVPY EKCSNSSVMT PCDVMDSSAN NFCEDTAFEH CDPISPLSCS  420
AASVFNEYTP PISSSSLDEL PPPRGPSGSD IILPSAEDVS TPNPLGGKIK PKPEFLRPDA  480
ILGSAWLLES SQMAKDHTDM NNAIATLLGD ECCSEHKPLT TETSVSFTGA LGLDSYPWNN  540
MPRVCQISEH P*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11440.1	2e-88	MYB family protein