PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_02.124

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 563aa MW: 62326.9 Da PI: 7.8499

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_02.124	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.7e-16	70	116	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l evm.model.AsparagusV1_02.124 70 KGGWTPQEDETLRHAVEAYRGRCWKKIAEFFP-DRSEVQCLHRWQKVL 116 688***************************.**********986 PP
2	Myb_DNA-binding	62.8	6.6e-20	122	168	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde++v +v+++G+ W+ Ia+ ++ gR +kqc++rw+++l evm.model.AsparagusV1_02.124 122 KGPWTQEEDEKIVALVAKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 168 79****************************.***********97 PP
3	Myb_DNA-binding	53.4	6e-17	174	217	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++W+ eE++ l +a++ +G++ W+ Ia+ ++ gRt++++k++w++ evm.model.AsparagusV1_02.124 174 RDAWSVEEELALMNAHRVYGNR-WAEIAKVLP-GRTDNSIKNHWNS 217 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MIFEMVEVMA AVKMEERCCV ENKQSAAEST SSSVSEGSYG FASPSPAASS PVVSSLPAHR 60 RTSGPIRRAK GGWTPQEDET LRHAVEAYRG RCWKKIAEFF PDRSEVQCLH RWQKVLNPDL 120 IKGPWTQEED EKIVALVAKY GPTKWSVIAK SLPGRIGKQC RERWHNHLNP MIKRDAWSVE 180 EELALMNAHR VYGNRWAEIA KVLPGRTDNS IKNHWNSSLK KKLDFYLATG QLPATPKPAM 240 HYGSKDTTHL ANGRLFSCSN KTSDTSEPDA RNKNLAEIAA CLGSSLPTES CKLEEREDCL 300 EPLPFKLSLT EALTGAPVTV RDHSDAVEID PISGNASDLE PQLADFRNSC EIDQESKKAQ 360 TLSQPEISSL YYEPLYYVPP RLEDIDVSVA SPLPTTYQFM EKGYTFSTFS SPNSYLTPLF 420 SNGKSSDEQN FESIIRTAAR SYTNTPSILS RKRKTDSPVA PDRTDKTNKA KIIAVNTSSS 480 ENMCGASTSS LCNGINSNSS PAYQSKRSAR LKSVEKKKLD FTSFEESIDG GNQYSSLKQS 540 DHPVGFESMT SNFARATKLG VT*

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MIFEMVEVMA AVKMEERCCV ENKQSAAEST SSSVSEGSYG FASPSPAASS PVVSSLPAHR  60
RTSGPIRRAK GGWTPQEDET LRHAVEAYRG RCWKKIAEFF PDRSEVQCLH RWQKVLNPDL  120
IKGPWTQEED EKIVALVAKY GPTKWSVIAK SLPGRIGKQC RERWHNHLNP MIKRDAWSVE  180
EELALMNAHR VYGNRWAEIA KVLPGRTDNS IKNHWNSSLK KKLDFYLATG QLPATPKPAM  240
HYGSKDTTHL ANGRLFSCSN KTSDTSEPDA RNKNLAEIAA CLGSSLPTES CKLEEREDCL  300
EPLPFKLSLT EALTGAPVTV RDHSDAVEID PISGNASDLE PQLADFRNSC EIDQESKKAQ  360
TLSQPEISSL YYEPLYYVPP RLEDIDVSVA SPLPTTYQFM EKGYTFSTFS SPNSYLTPLF  420
SNGKSSDEQN FESIIRTAAR SYTNTPSILS RKRKTDSPVA PDRTDKTNKA KIIAVNTSSS  480
ENMCGASTSS LCNGINSNSS PAYQSKRSAR LKSVEKKKLD FTSFEESIDG GNQYSSLKQS  540
DHPVGFESMT SNFARATKLG VT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	450	455	SRKRKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-118	MYB family protein