PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_02.1212

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 378aa MW: 41674.7 Da PI: 4.4686

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_02.1212	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.5	4.3e-12	187	230	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL AveY+k+L evm.model.AsparagusV1_02.1212 187 LMAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAVEYLKEL 230 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MEQQREIKQE EEPNPLFNLA PTMEEEDPLP TFTSLLGYTT NCNNTISNSD WYLTEPLQNH 60 QESFSSLLST NPFGLDPFGL SAPLSFTDLN PIAQFQTTHL PETGFQAFET PKFVNGSKFV 120 RPAEANPSIG AQPTLIGEEN EEEGVEDGSF DGSGLNCEFE ENVKSLDNNE SNERRRKRNG 180 AAPAKNLMAE RRRRKKLNDR LYMLRSVVPK ISKMDRASIL GDAVEYLKEL LQKINDLTNE 240 LESTSSSPSV LPTDTTSFQP LTPRPLTLPC RVKEDLSPSP SPLPSPIGQP TTVEVKMTDD 300 QAVNIHMLCS RRPGLLLSTL RALDALGLNI QQAVISCFNG FSLDVFQAEQ CNDGSCALPE 360 DIKSVLLHSA GSHGTLY*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MEQQREIKQE EEPNPLFNLA PTMEEEDPLP TFTSLLGYTT NCNNTISNSD WYLTEPLQNH  60
QESFSSLLST NPFGLDPFGL SAPLSFTDLN PIAQFQTTHL PETGFQAFET PKFVNGSKFV  120
RPAEANPSIG AQPTLIGEEN EEEGVEDGSF DGSGLNCEFE ENVKSLDNNE SNERRRKRNG  180
AAPAKNLMAE RRRRKKLNDR LYMLRSVVPK ISKMDRASIL GDAVEYLKEL LQKINDLTNE  240
LESTSSSPSV LPTDTTSFQP LTPRPLTLPC RVKEDLSPSP SPLPSPIGQP TTVEVKMTDD  300
QAVNIHMLCS RRPGLLLSTL RALDALGLNI QQAVISCFNG FSLDVFQAEQ CNDGSCALPE  360
DIKSVLLHSA GSHGTLY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	196	RRRKRNGAAPAKNLMAERRRRKK
2	175	197	RRRKRNGAAPAKNLMAERRRRKK
3	176	196	RKRNGAAPAKNLMAERRRRKK
4	176	198	RRRKRNGAAPAKNLMAERRRRKK
5	190	197	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	5e-69	bHLH family protein