PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_02.1124

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 231aa MW: 26233.2 Da PI: 10.8569

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_02.1124	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19	2.5e-06	72	102	1	31
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas 31 +r++h ++Er+ R+++N+ + Lr+l+ + + evm.model.AsparagusV1_02.1124 72 QRMTHIAVERNQRRHMNEYLTILRSLMLNHM 102 79************************99854 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MKGVVLKNEI NGTGGGGDYV NFNHCSANSS ASPVTGEAFV GREDKAIEEM TTTRRKRRRT 60 NSYKNKEEVE SQRMTHIAVE RNQRRHMNEY LTILRSLMLN HMPKGVEFYL LSNSVKKMAM 120 RMKSKGERMR ARGENRIENL GLLIGFGGKE GVDFVLEVSR QALMREELTK NLGFVSRSKS 180 NEEEEVEKAM RQMSGLRLGR RRRRLRSLDG ISSNVVISIV CFVQICRLNG *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	59	RKRRR
2	55	60	RKRRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-13	bHLH family protein