PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_02.1016 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 26023.9 Da PI: 6.7868 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.5 | 2.1e-12 | 166 | 211 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k s a++L +Av++Ik+Lq evm.model.AsparagusV1_02.1016 166 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVQHIKELQ 211 689*********************7....688*****************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence |
MEVCGDHLMR QSSSPAGFFS QLMVDSGYAA TRSIGHYSHP VTNNIHTMPH TRLKSQLSFS 60 SQEPLSQISE NNDETDGNVA HSYVSNSFSI GSWDDTNSIA FSSPSNKRAK NSSEDFIKSL 120 SHIDSQFSLP TTSLEMAAVE NLFQAQQDSV AFKVRAKRGC ATHPRSIAER ERRTRISEKL 180 RKLQELVPNM DKQTSTADML DLAVQHIKEL QSQVQNLNQE QANCTCECKK ELP* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G05805.1 | 4e-63 | bHLH family protein |