PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.829
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family ARF
Protein Properties Length: 657aa    MW: 73275.2 Da    PI: 7.4142
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.829genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.84.9e-24122223199
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L
  evm.model.AsparagusV1_01.829 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKL 200
                                   89****************************996555555..8999************************************ PP

                                   -TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  75 kegDfvvFkldgrsefelvvkvfrk 99 
                                    +gD++vF   +++++el+v+++r+
  evm.model.AsparagusV1_01.829 201 VAGDSIVFL--RTENGELCVGIRRA 223
                                   *********..559999******97 PP

2Auxin_resp115.93.5e-38287370183
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWr 80 
                                   aa+ a+++++FevvY+Prast+eF+vk++ v++a+++++++GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr
  evm.model.AsparagusV1_01.829 287 AATLAASGQAFEVVYYPRASTPEFCVKASAVRAAMRIRWCPGMRFKMPFETEDSSRISWfMGTISSVQVADPLRWPNSPWR 367
                                   68899**************************************************************************** PP

                    Auxin_resp  81 sLk 83 
                                   +L+
  evm.model.AsparagusV1_01.829 368 LLE 370
                                   996 PP

Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    
MFGNSTKELL KDSEKCLDSQ LWHVCAGGMI QMPPVNSKIY YFPQGQAEHA VTNVDFGNAR  60
IPALVHCRVA SVKFLADRET DEVFSKIKLI PVRDNESDYS EADDQLSLNG NGPDLQEKPA  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVLAKDVHGE VWKFRHIYRG  180
TPRRHLLTTG WSTFVNQKKL VAGDSIVFLR TENGELCVGI RRAKREMGNG PNSISGWNPP  240
PYGGFSMFLR EEESKLMRGN SNNGINCGGF ANIRGRGRVK AESVTEAATL AASGQAFEVV  300
YYPRASTPEF CVKASAVRAA MRIRWCPGMR FKMPFETEDS SRISWFMGTI SSVQVADPLR  360
WPNSPWRLLE VTWDEPDLLQ NVKRVSPWLV ELVSNIPSIH LTPFSSPRKK LRLPHHPDFP  420
LESQYPTPTI FPENHLLGPS SRPAGIQGAR HSQFGTISLP NIHLNKLHPA LFPSNFHPTP  480
PSRISTSLFM NNPPVHNNVS CLLTIGTPPQ ALKKPFDKKA PQFVLFGQPI LTEEQISLSN  540
SLNSSSDDNH EKVANWSCED FPCYKHCKVF MESEDVGRTL DLSALDSYEE LYEKLGGMFG  600
IEKSEIMSHV VYCDAFGAVK HTGDEPFSEF MKTARRLTVL MDSSSDNIIR GYIVQS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein