PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_01.829 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | ARF | ||||||||
Protein Properties | Length: 657aa MW: 73275.2 Da PI: 7.4142 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.8 | 4.9e-24 | 122 | 223 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L evm.model.AsparagusV1_01.829 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKL 200 89****************************996555555..8999************************************ PP -TT-EEEEEE-SSSEE..EEEEE-S CS B3 75 kegDfvvFkldgrsefelvvkvfrk 99 +gD++vF +++++el+v+++r+ evm.model.AsparagusV1_01.829 201 VAGDSIVFL--RTENGELCVGIRRA 223 *********..559999******97 PP | |||||||
2 | Auxin_resp | 115.9 | 3.5e-38 | 287 | 370 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWr 80 aa+ a+++++FevvY+Prast+eF+vk++ v++a+++++++GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr evm.model.AsparagusV1_01.829 287 AATLAASGQAFEVVYYPRASTPEFCVKASAVRAAMRIRWCPGMRFKMPFETEDSSRISWfMGTISSVQVADPLRWPNSPWR 367 68899**************************************************************************** PP Auxin_resp 81 sLk 83 +L+ evm.model.AsparagusV1_01.829 368 LLE 370 996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 657 aa Download sequence |
MFGNSTKELL KDSEKCLDSQ LWHVCAGGMI QMPPVNSKIY YFPQGQAEHA VTNVDFGNAR 60 IPALVHCRVA SVKFLADRET DEVFSKIKLI PVRDNESDYS EADDQLSLNG NGPDLQEKPA 120 SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVLAKDVHGE VWKFRHIYRG 180 TPRRHLLTTG WSTFVNQKKL VAGDSIVFLR TENGELCVGI RRAKREMGNG PNSISGWNPP 240 PYGGFSMFLR EEESKLMRGN SNNGINCGGF ANIRGRGRVK AESVTEAATL AASGQAFEVV 300 YYPRASTPEF CVKASAVRAA MRIRWCPGMR FKMPFETEDS SRISWFMGTI SSVQVADPLR 360 WPNSPWRLLE VTWDEPDLLQ NVKRVSPWLV ELVSNIPSIH LTPFSSPRKK LRLPHHPDFP 420 LESQYPTPTI FPENHLLGPS SRPAGIQGAR HSQFGTISLP NIHLNKLHPA LFPSNFHPTP 480 PSRISTSLFM NNPPVHNNVS CLLTIGTPPQ ALKKPFDKKA PQFVLFGQPI LTEEQISLSN 540 SLNSSSDDNH EKVANWSCED FPCYKHCKVF MESEDVGRTL DLSALDSYEE LYEKLGGMFG 600 IEKSEIMSHV VYCDAFGAVK HTGDEPFSEF MKTARRLTVL MDSSSDNIIR GYIVQS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | ARF family protein |