PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.782

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 371aa MW: 41329 Da PI: 8.6541

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.782	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.3	4.4e-16	223	269	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRd+iN+++ L+el+P + K +Ka++L A+eY+ksLq evm.model.AsparagusV1_01.782 223 VHNLSERRRRDKINEKMKALQELIPRC-----NKSDKASMLDDAIEYLKSLQ 269 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MQRHFVPEFD FKENEEPLTF DSPPPSPQKH ADHADEGSIM ELAWHQGPVI GPLHADPFLT 60 QRTCVRRAER AKGATFNGGG RDGHVATQHD QVEERGEIIL EQSSKGVVVV RRLRRELRCR 120 GGCRCCCLSA AAAATAAATS TEFDAVGKAF DTIWSPARDS GGRGAHASEG KRKARTGRDP 180 GCHQELDKSC SEEREHNNLK GVRVEHGNKK KEVLTSRTRA AEVHNLSERR RRDKINEKMK 240 ALQELIPRCN KSDKASMLDD AIEYLKSLQL QVQMLSSMQY NMGHMMFPDM QRYMQTLGFM 300 GMSMAMASGG IQRPMMSFAP ILPYPPVIAT PPPNPQPRPV PSFHLANAVI PDQVPNFANP 360 YHHFAPIHHF *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MQRHFVPEFD FKENEEPLTF DSPPPSPQKH ADHADEGSIM ELAWHQGPVI GPLHADPFLT  60
QRTCVRRAER AKGATFNGGG RDGHVATQHD QVEERGEIIL EQSSKGVVVV RRLRRELRCR  120
GGCRCCCLSA AAAATAAATS TEFDAVGKAF DTIWSPARDS GGRGAHASEG KRKARTGRDP  180
GCHQELDKSC SEEREHNNLK GVRVEHGNKK KEVLTSRTRA AEVHNLSERR RRDKINEKMK  240
ALQELIPRCN KSDKASMLDD AIEYLKSLQL QVQMLSSMQY NMGHMMFPDM QRYMQTLGFM  300
GMSMAMASGG IQRPMMSFAP ILPYPPVIAT PPPNPQPRPV PSFHLANAVI PDQVPNFANP  360
YHHFAPIHHF *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	233	ERRRRD
2	229	234	RRRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	2e-23	bHLH family protein