PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.645
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family LBD
Protein Properties Length: 225aa    MW: 25172.1 Da    PI: 7.0366
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.645genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.59.5e-38181181101
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   +CaaCk+lrr+C++dCvl+pyfp ++p++fa+vh++FGasnv+++l++lp + r +a++++  eA +r++dPvyG+vg+i 
  evm.model.AsparagusV1_01.645  18 RCAACKYLRRRCSQDCVLSPYFPPSNPQRFACVHRIFGASNVTRMLQQLPAHLRAQAADAISSEAYWRVNDPVYGSVGIIA 98 
                                   6******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallkeel 101
                                   +l++++  +++elal+++++
  evm.model.AsparagusV1_01.645  99 RLHEDIYMHQHELALTRAQI 118
                                   ***************99885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MSASNSSYNI SKESNLRRCA ACKYLRRRCS QDCVLSPYFP PSNPQRFACV HRIFGASNVT  60
RMLQQLPAHL RAQAADAISS EAYWRVNDPV YGSVGIIARL HEDIYMHQHE LALTRAQIAM  120
HAAQHQYQVN SDHPPEIQTQ TQQLDSLALQ TQTQIQTQQL DSLAIQTQHR YQVTSGHPPK  180
IQTQTQQLDS LVLQTQESNP DSAVGFTCYS DSDPDPFPAI GFTC*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.11e-47LBD family protein