PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.569

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 495aa MW: 54097.6 Da PI: 6.0477

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.569	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.1	6.8e-18	199	248	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq evm.model.AsparagusV1_01.569 199 RSKHSATEQRRRSKINDRFQILRDLIPNS----DQKRDKASFLLEVIEYIRFLQ 248 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MEFQGKKATH DFLSLYNKDS SIQLQDSRPP PQGFYLKTHD FLKPLEKPEE EADPAQQPGP 60 TNRAATAAHV LPGGIGTFSL SHVPEKGSPA AGEAQLVTCA REPGGGLHAG AGFALWDTKE 120 NGYRGHWPSP FVARAATRSQ SAQDKKRFMD SGSRSSRGFD EEDDDDEEFG KREGISRKVE 180 LAVKVDGKGG HDQKAMTPRS KHSATEQRRR SKINDRFQIL RDLIPNSDQK RDKASFLLEV 240 IEYIRFLQEK VNKYESSYPG WSDENAKLTP WQNTNQVTKN GHSPGFIYSV DDDRVPAAPG 300 MISTAQNPLE SDTSAGGVLY KTVENPVAFT SKASSAPIPS QLNYASLERE TSVGQPQQRL 360 ISDIDSLASQ SQSQWLRPSG PVDCSESGEM SNEQEELTID EGTINVSTAY SQNMLNALNQ 420 ALASSGIDLS QANISVQINL GKRAPRRATA TTMSSAKELV DPLSGNRSAI DHYRVGSSGE 480 ESEQALKRRR LDNS*

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MEFQGKKATH DFLSLYNKDS SIQLQDSRPP PQGFYLKTHD FLKPLEKPEE EADPAQQPGP  60
TNRAATAAHV LPGGIGTFSL SHVPEKGSPA AGEAQLVTCA REPGGGLHAG AGFALWDTKE  120
NGYRGHWPSP FVARAATRSQ SAQDKKRFMD SGSRSSRGFD EEDDDDEEFG KREGISRKVE  180
LAVKVDGKGG HDQKAMTPRS KHSATEQRRR SKINDRFQIL RDLIPNSDQK RDKASFLLEV  240
IEYIRFLQEK VNKYESSYPG WSDENAKLTP WQNTNQVTKN GHSPGFIYSV DDDRVPAAPG  300
MISTAQNPLE SDTSAGGVLY KTVENPVAFT SKASSAPIPS QLNYASLERE TSVGQPQQRL  360
ISDIDSLASQ SQSQWLRPSG PVDCSESGEM SNEQEELTID EGTINVSTAY SQNMLNALNQ  420
ALASSGIDLS QANISVQINL GKRAPRRATA TTMSSAKELV DPLSGNRSAI DHYRVGSSGE  480
ESEQALKRRR LDNS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	487	491	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-58	bHLH family protein