PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.3639

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 1031aa MW: 113792 Da PI: 8.4876

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.3639	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.1e-09	141	188	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + s Ka++L + ++Y++sLq evm.model.AsparagusV1_01.3639 141 SHSLAERVRREKISERMKYLQDLVPGC----SNTTGKASVLDEIINYVQSLQ 188 8***********************9....67789*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1031 aa Download sequence
MRTCANWQQA SSGSRRPCTP NQSMWFYGLQ LPLTLGQNFT AAAYSASQQY PTLEDHKSAV 60 TVSQNTLPNI SATGDAVKKR RVDAKRDSSD ENKKKKIDAD VLEMPELESN SNQKKEASES 120 GAPKSTDFIH VRARRGQATD SHSLAERVRR EKISERMKYL QDLVPGCSNT TGKASVLDEI 180 INYVQSLQKQ VEFLSMKLAA VSPPIECNMQ SFMGREVCGS SAWDYNAQSL QDGLYPRKGN 240 GACSFMVALA MASFMITAGS LKSSTGVLIT VDKLGRGNFM KIQDAIDVVP SNNSVHVLIS 300 IKPGVYEENV VIPEDKPFIT LKGEHTKSTI IRWDGRWKAA DKTTLFIQAS DVVVKQLTVQ 360 NEYNLTREGA IAVRVSGDRV AFFSCRFLGI QDTVLDDSGK HYYWKCYIEG ATDFICGNGK 420 SLFQNCALHS TSTYGGAITA HRRKMPTEDT YFIFRHCKIT GTKGGRAILG RPWGSYSRVV 480 FAYSYMSSVV LPEAEAAIKK YQFDVVVKNV SRLSHPKPIV TVNGRFPGPT IYAREGDRVV 540 VNVTNHAQYN LSIHWHGLKQ FRNGWADGPA YITQCPIQSG NSYSYDFNVT GQRGTLWWHA 600 HILWLRATVH GAIVIMPKQG VPFPFPQPHG ESVLVLGEWW NSDVEELVKQ GNALGLPPNM 660 SDAHTINGKP GPLFPCSDKH TFVTEVEWGK TYLLRIVNAA LNDELFFAIA GHNMTVVEID 720 AVYCKPFTTS AILITPGQTT NVLVTANQAP GRYFMAARDF NDAPIPVDNK TATAILQYKG 780 VPDTVIPVLP QLPAQNDTSF VDTYSNSLRS LNTPQFPANV PLTIDRHLFF TVGLGRDPCP 840 TCLNSTKLTA SINNVTFVMP KIGLLQAHYF NINGVFKLDF PDKPPAPFNY TGAPLTANLG 900 TSLGTRLSKL AFNSTVELVL QDTNLLTVES HPFHLHGFNF FVVGRGVGNF DPAKDLAKFN 960 LVDPPERNTV GVPTGGWTAI RFRADNPGVW FMHCHLELHT MWGLKMAFVV ENGNGPDQSI 1020 LPPPNDLPPC *

Sequence ? help Back to Top

Protein Sequence Length: 1031 aa Download sequence

MRTCANWQQA SSGSRRPCTP NQSMWFYGLQ LPLTLGQNFT AAAYSASQQY PTLEDHKSAV  60
TVSQNTLPNI SATGDAVKKR RVDAKRDSSD ENKKKKIDAD VLEMPELESN SNQKKEASES  120
GAPKSTDFIH VRARRGQATD SHSLAERVRR EKISERMKYL QDLVPGCSNT TGKASVLDEI  180
INYVQSLQKQ VEFLSMKLAA VSPPIECNMQ SFMGREVCGS SAWDYNAQSL QDGLYPRKGN  240
GACSFMVALA MASFMITAGS LKSSTGVLIT VDKLGRGNFM KIQDAIDVVP SNNSVHVLIS  300
IKPGVYEENV VIPEDKPFIT LKGEHTKSTI IRWDGRWKAA DKTTLFIQAS DVVVKQLTVQ  360
NEYNLTREGA IAVRVSGDRV AFFSCRFLGI QDTVLDDSGK HYYWKCYIEG ATDFICGNGK  420
SLFQNCALHS TSTYGGAITA HRRKMPTEDT YFIFRHCKIT GTKGGRAILG RPWGSYSRVV  480
FAYSYMSSVV LPEAEAAIKK YQFDVVVKNV SRLSHPKPIV TVNGRFPGPT IYAREGDRVV  540
VNVTNHAQYN LSIHWHGLKQ FRNGWADGPA YITQCPIQSG NSYSYDFNVT GQRGTLWWHA  600
HILWLRATVH GAIVIMPKQG VPFPFPQPHG ESVLVLGEWW NSDVEELVKQ GNALGLPPNM  660
SDAHTINGKP GPLFPCSDKH TFVTEVEWGK TYLLRIVNAA LNDELFFAIA GHNMTVVEID  720
AVYCKPFTTS AILITPGQTT NVLVTANQAP GRYFMAARDF NDAPIPVDNK TATAILQYKG  780
VPDTVIPVLP QLPAQNDTSF VDTYSNSLRS LNTPQFPANV PLTIDRHLFF TVGLGRDPCP  840
TCLNSTKLTA SINNVTFVMP KIGLLQAHYF NINGVFKLDF PDKPPAPFNY TGAPLTANLG  900
TSLGTRLSKL AFNSTVELVL QDTNLLTVES HPFHLHGFNF FVVGRGVGNF DPAKDLAKFN  960
LVDPPERNTV GVPTGGWTAI RFRADNPGVW FMHCHLELHT MWGLKMAFVV ENGNGPDQSI  1020
LPPPNDLPPC *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	96	KKRRVDAKRDSSDENKKKK
2	79	97	KKRRVDAKRDSSDENKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26260.3	5e-42	bHLH family protein