PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_01.3533 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | NF-YC | ||||||||
Protein Properties | Length: 204aa MW: 22658.4 Da PI: 7.9989 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 169.5 | 4e-53 | 74 | 175 | 3 | 101 |
NF-YC 3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdi 79 k fw++q ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt rsw haeenkrrtl+k+di evm.model.AsparagusV1_01.3533 74 KLFWADQyreIEQTTDFKNHSLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRSWAHAEENKRRTLQKNDI 153 78***99999********************************************************************** PP NF-YC 80 aaavtrtdifdflvdivprdel 101 aaa+trtd+fdflvdivpr+e evm.model.AsparagusV1_01.3533 154 AAAITRTDVFDFLVDIVPREEG 175 *******************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence |
MNHTGSSKSF ARHMTDYDFI SKYGSSARAQ PSSCYGGCSP TPLPAANSCV HRHAYKPYHT 60 SANNSSSSSS SSSKLFWADQ YREIEQTTDF KNHSLPLARI KKIMKADEDV RMIAAEAPVV 120 FARACEMFIL ELTHRSWAHA EENKRRTLQK NDIAAAITRT DVFDFLVDIV PREEGKEDML 180 GAAAGVPRAL VGNDPLSYYY VQQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 151 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.1 | 1e-69 | NF-YC family protein |