PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_01.3458 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 28867.4 Da PI: 8.1096 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ ++k+ G+g+W + ++++g++R++k+c++rw++yl evm.model.AsparagusV1_01.3458 14 KGPWSQEEDATLKAYIKENGTGNWIALPQKIGLKRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 40.2 | 7.9e-13 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd+++ ++ G++ W+ Ia+ ++ gRt++++k++w++ evm.model.AsparagusV1_01.3458 68 GDFSDEEDQIICNLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 110 679******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence |
MGRAPCCDKA NVKKGPWSQE EDATLKAYIK ENGTGNWIAL PQKIGLKRCG KSCRLRWLNY 60 LRPNIKHGDF SDEEDQIICN LYISIGSRWS IIAAQLPGRT DNDIKNYWNT RLKKKLLGPP 120 LKETSRFSSQ RPKPNSQTLT LNSTALERIQ LHNLQFQGIN NTFSFYNNPA LWSKLHPLRG 180 TNDSLIPTKN TENEPSHNQP VTAGSKDQDS CETSSNFNLM QAELNDLFYA FDEEAISSSS 240 WGLVFQDYET GYDL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 4e-81 | MYB family protein |