PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.3372

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

SBP

Protein Properties

Length: 669aa MW: 74024.3 Da PI: 7.793

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.3372	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	68	1.9e-21	82	130	1	49
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 +Cqv++C+adls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsr evm.model.AsparagusV1_01.3372 82 MCQVDDCRADLSHAKDYHRRHKVCEIHSKATNALVGNQMQRFCQQCSRC 130 6**********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence
MGLEQCKIXX XXILNLGSSN ANPDARAEET AKVQTLSKNL EEGEALTLKL GGPVYSGAED 60 QAVRPNKRVR SGSPGNGGNY PMCQVDDCRA DLSHAKDYHR RHKVCEIHSK ATNALVGNQM 120 QRFCQQCSRC RSSACSIVSD HSPSSTNSDA QDRTGRIIFK LFDKDPSKIP AALRSQIVNW 180 LAHSPSEMES YIRPGCVVLS IYAAMPSIVW DELEEDLLQR VTSLVHNSDS AFWKNGRFLV 240 RTSRQLASHK DGKIRLSKSW RTWSAPELIS VSPVAVVSGQ DTSLVLKGRN LTIPGTKIHC 300 TYMGGYTSKE VLGSAYPGTI YDDSSSENFV LPGGLPNTFG RCFIEVENGF KGNSFPVIIA 360 NSTICQELGA LESEFEEEVG TSDNGCPSSR EDLLHFLNEL GWLFQRKGSL VPHFVDFSSS 420 RFKFLFTFSV ERDWSAVVKT LLDILVERSL KSDALAQESL EMLLEIQLLN RAVKRKCSKM 480 VDLLITYCVI RGNSKVYLFP PNLFGPGGVT PLHLAASIQD SEDIIDALTN DPQEIGINCW 540 NSILDESGQS PYMYASQRNN HSYNRLVARK LADKKNRQVS INVGDEISMD KSNGIRELEV 600 SSCAKCAFME KTRGKRIARG RGLLERPYVH SMLAIAAVCV CVCLFFRGSP QIGTIAPFKW 660 ENLDFGPK*

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence

MGLEQCKIXX XXILNLGSSN ANPDARAEET AKVQTLSKNL EEGEALTLKL GGPVYSGAED  60
QAVRPNKRVR SGSPGNGGNY PMCQVDDCRA DLSHAKDYHR RHKVCEIHSK ATNALVGNQM  120
QRFCQQCSRC RSSACSIVSD HSPSSTNSDA QDRTGRIIFK LFDKDPSKIP AALRSQIVNW  180
LAHSPSEMES YIRPGCVVLS IYAAMPSIVW DELEEDLLQR VTSLVHNSDS AFWKNGRFLV  240
RTSRQLASHK DGKIRLSKSW RTWSAPELIS VSPVAVVSGQ DTSLVLKGRN LTIPGTKIHC  300
TYMGGYTSKE VLGSAYPGTI YDDSSSENFV LPGGLPNTFG RCFIEVENGF KGNSFPVIIA  360
NSTICQELGA LESEFEEEVG TSDNGCPSSR EDLLHFLNEL GWLFQRKGSL VPHFVDFSSS  420
RFKFLFTFSV ERDWSAVVKT LLDILVERSL KSDALAQESL EMLLEIQLLN RAVKRKCSKM  480
VDLLITYCVI RGNSKVYLFP PNLFGPGGVT PLHLAASIQD SEDIIDALTN DPQEIGINCW  540
NSILDESGQS PYMYASQRNN HSYNRLVARK LADKKNRQVS INVGDEISMD KSNGIRELEV  600
SSCAKCAFME KTRGKRIARG RGLLERPYVH SMLAIAAVCV CVCLFFRGSP QIGTIAPFKW  660
ENLDFGPK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein