PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.3213
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family LBD
Protein Properties Length: 211aa    MW: 22548.2 Da    PI: 5.3354
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.3213genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26046.78.9e-152574499
                         DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99
                                   +l+++ p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e++l ++
  evm.model.AsparagusV1_01.3213  2 NLINSGPDNLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGA 57
                                   6788999999****************************************998766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MNLINSGPDN LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIV  60
QIPSETAAST PVPPLKAYDI RHISKDSDPA GSRPADNLHK VHKTRTRFKR AGNKKTGDES  120
DRVFTRAKSH ESSGGSHVSE SRENEASMAS VDTVEASHVS QGEPAEESEV ELELTLGFEV  180
HRPVATAPPE IGVLDDDTCR VELGLELAAA *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-46LBD family protein