PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.2944

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 614aa MW: 68936.9 Da PI: 9.5976

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.2944	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26	1.6e-08	501	548	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + k + a +L + ++Y++sLq evm.model.AsparagusV1_01.2944 501 SHSLAERVRREKINERMRCLQDLVPGC----YKTMGMAGTLDEIINYVQSLQ 548 8***********************9....356999************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
MDGIVPQMRS EHWRAYGSSN FKNYVSFGMI PSDKATIMLL LDNVDLATGK FFFNDSQTGT 60 KQAYTFDLNW VRKHTRFNDE GEKPEGNRDM DNRIWTTYFS NKQQSQYKSG RGYLEALLEK 120 LVRSKKKSDV SDFVMLQILY QLTMIWTPTA RMNAPRHMFK YVARVDAVDH FPWATIIYKE 180 LWDSFKAVKK ATKGLTYLSG CAPLLSMHAS DIADFIRKEV NLPPVLIGHS FGGLIVQSYL 240 SNRYSSHRSS SSVSDNLHPL LAGAVLVCSV PPSGNSGLVW RYLLTKPVVA IKVTLSLAAK 300 AFANSLSLCK ETFFSSKMDD RLVQRYQELM RESSKLPLFD LKMLNASLPV ASIPKNSVEV 360 LVIGASNDFI VDKEGLHETA KFFDVQEVSI QGVAHDIMLD SSWEKGAETI LSWLKSSSLS 420 PVESPKKPLS PVQAVSVGEQ RKGEKKRKAE AVSETNSLQY SSVVAPSETK KKNRGRRNSK 480 EEEKPKEVVH VRARRGQATD SHSLAERVRR EKINERMRCL QDLVPGCYKT MGMAGTLDEI 540 INYVQSLQNQ VEFLSMKLTA ASSFYDFNSD IEATATTQPV LPRVSDAYQA QEMERVMRGG 600 YGGCPSFQST MPF*

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

MDGIVPQMRS EHWRAYGSSN FKNYVSFGMI PSDKATIMLL LDNVDLATGK FFFNDSQTGT  60
KQAYTFDLNW VRKHTRFNDE GEKPEGNRDM DNRIWTTYFS NKQQSQYKSG RGYLEALLEK  120
LVRSKKKSDV SDFVMLQILY QLTMIWTPTA RMNAPRHMFK YVARVDAVDH FPWATIIYKE  180
LWDSFKAVKK ATKGLTYLSG CAPLLSMHAS DIADFIRKEV NLPPVLIGHS FGGLIVQSYL  240
SNRYSSHRSS SSVSDNLHPL LAGAVLVCSV PPSGNSGLVW RYLLTKPVVA IKVTLSLAAK  300
AFANSLSLCK ETFFSSKMDD RLVQRYQELM RESSKLPLFD LKMLNASLPV ASIPKNSVEV  360
LVIGASNDFI VDKEGLHETA KFFDVQEVSI QGVAHDIMLD SSWEKGAETI LSWLKSSSLS  420
PVESPKKPLS PVQAVSVGEQ RKGEKKRKAE AVSETNSLQY SSVVAPSETK KKNRGRRNSK  480
EEEKPKEVVH VRARRGQATD SHSLAERVRR EKINERMRCL QDLVPGCYKT MGMAGTLDEI  540
INYVQSLQNQ VEFLSMKLTA ASSFYDFNSD IEATATTQPV LPRVSDAYQA QEMERVMRGG  600
YGGCPSFQST MPF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	440	448	QRKGEKKRK
2	445	472	KKRKAEAVSETNSLQYSSVVAPSETKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	5e-47	bHLH family protein