PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.2723

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 642aa MW: 70946.8 Da PI: 8.7599

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.2723	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9e-05	198	237	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq evm.model.AsparagusV1_01.2723 198 VRKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 237 57788999*******998.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence
MMESSNLNLD LHHQEDFHGS SSSLALQGWN QDLMLNSAEF PHGALPSSRN FMRTTNNGMP 60 MVQELGFQWT PSGHDQGYMM NTNQSPCSSS SSHQTLGFPI PKNNIKEELS IASTINLHDY 120 SLMPFHGSFS NVFPSENVSG SVLQSFCPNP LGMDLHALDL LASARFGRTM SQPLFDGYGL 180 GQLQEQAQAQ VSTSYHKVRK EKLGDRIAAL QQLVAPFGKT DTASVLMEAI GYIKFLQDQV 240 ETLSVPYMRS SNNKKSRTSQ GAEASKEKDE AKPDLRSRGL CLVPLSCTSY VTNENGGVWS 300 PPNYQGALPA IPGHPNKNLA SAGKDDTTII RSLVFCTIIG NDSARVKGRK DSMGTLPGPV 360 ICRPAVHVRH GRVHYPLINS SSLTTKGGFL KSGFWGSRKK YGCMIRVGFQ FSKQHERKKG 420 LIRCTFSSSS DGNGSMAENF SESDGDYVNS SVIEAVEVKS GSDGFLIKMR DGRHLRCVHN 480 NPHGGPLPDY APHPAIVLKM EDGSDLLLPI IVLEMPSILL MAAVRNVQIA RPTIYQVVKE 540 MVDKMGYQVQ LVRVTKRVHE AYFAQLYLIK AGNEKESISF DLRPSDAINM AVRPDGQPCL 600 ETKEFDLVRN MLIAAVEERY RDAAQWKDKL MQLRAKRRNW A*

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence

MMESSNLNLD LHHQEDFHGS SSSLALQGWN QDLMLNSAEF PHGALPSSRN FMRTTNNGMP  60
MVQELGFQWT PSGHDQGYMM NTNQSPCSSS SSHQTLGFPI PKNNIKEELS IASTINLHDY  120
SLMPFHGSFS NVFPSENVSG SVLQSFCPNP LGMDLHALDL LASARFGRTM SQPLFDGYGL  180
GQLQEQAQAQ VSTSYHKVRK EKLGDRIAAL QQLVAPFGKT DTASVLMEAI GYIKFLQDQV  240
ETLSVPYMRS SNNKKSRTSQ GAEASKEKDE AKPDLRSRGL CLVPLSCTSY VTNENGGVWS  300
PPNYQGALPA IPGHPNKNLA SAGKDDTTII RSLVFCTIIG NDSARVKGRK DSMGTLPGPV  360
ICRPAVHVRH GRVHYPLINS SSLTTKGGFL KSGFWGSRKK YGCMIRVGFQ FSKQHERKKG  420
LIRCTFSSSS DGNGSMAENF SESDGDYVNS SVIEAVEVKS GSDGFLIKMR DGRHLRCVHN  480
NPHGGPLPDY APHPAIVLKM EDGSDLLLPI IVLEMPSILL MAAVRNVQIA RPTIYQVVKE  540
MVDKMGYQVQ LVRVTKRVHE AYFAQLYLIK AGNEKESISF DLRPSDAINM AVRPDGQPCL  600
ETKEFDLVRN MLIAAVEERY RDAAQWKDKL MQLRAKRRNW A*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	8e-40	bHLH family protein