PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_01.2686 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 28664.2 Da PI: 5.8944 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.9 | 5.6e-14 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + + ++G g+W+ +++ g++R +k+c++rw +yl evm.model.AsparagusV1_01.2686 17 KGLWSPEEDEKLFNHIMRFGIGCWSNVPKQAGLKRWGKSCRLRWMNYL 64 678*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 44.2 | 4.5e-14 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++t+E++l++ + lG++ W+ Ia+ ++ gRt++++k++w++ evm.model.AsparagusV1_01.2686 70 RGNFSTQEEDLIIGLQGILGNR-WSQIASQLP-GRTDNEIKNYWNST 114 89********************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MGRNPSNMTT QKEKLRKGLW SPEEDEKLFN HIMRFGIGCW SNVPKQAGLK RWGKSCRLRW 60 MNYLRPDLKR GNFSTQEEDL IIGLQGILGN RWSQIASQLP GRTDNEIKNY WNSTLKKKLR 120 KMGVDLLTHK PISDAEQQQE EKSSCANFSM KSFFDSSPVT EFKVDISIDT IYDQLLQCTV 180 PEKWGYYEDS SSIGSSNSSN LIEDGALNWT SDCKLISFAE DQFNLSVDYS TFQSMPSMSS 240 SDVLFGISAG DS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 3e-66 | MYB family protein |