PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_01.2676 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | LBD | ||||||||
Protein Properties | Length: 145aa MW: 15954.1 Da PI: 7.44 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 66.9 | 4.6e-21 | 2 | 54 | 14 | 66 |
DUF260 14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAe 66 ++C++apyfp e+p+kfa vhk+FGasnv+kll++l +++reda++sl+yeAe evm.model.AsparagusV1_01.2676 2 PGCIFAPYFPPEEPQKFASVHKIFGASNVTKLLNDLLPHQREDAVNSLAYEAE 54 78**************************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence |
MPGCIFAPYF PPEEPQKFAS VHKIFGASNV TKLLNDLLPH QREDAVNSLA YEAEDALSTA 60 ASEPSPSSRG RSTVSRRSWT PPMPTSSATS SDMLIVISQL MVVSFTPTDV SCLQRILFYC 120 FLNVHDWSRS TSRKEKKQKE GIGD* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.2 | 3e-33 | LBD family protein |