PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.2554

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 387aa MW: 42657.6 Da PI: 6.5158

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.2554	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.1e-12	67	113	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN ++ Lr+++P Kl+Ka+ L +++ ++++L evm.model.AsparagusV1_01.2554 67 KMHSEAERRRRERINGHLAMLRSMVPCT-----DKLDKAALLAEVITHVNKL 113 57***********************7.....6***********99988 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MGSVPVGDSL RGLRGFGEGP SSASSLVLDE EKGELVRANL VKNGRKGGGG GGVGRGGCDE 60 KAAMALKMHS EAERRRRERI NGHLAMLRSM VPCTDKLDKA ALLAEVITHV NKLKSNATEM 120 SKGLSIPSDA DEVRVEVNRD GTKTESFLIK ASLSCEDRPD LLADVRQTLH YLHLKTVQAE 180 ICTSGGRIKI AFVITCDGNP SDMENHIFIN NVQQSLKSVL DKVTSPDLVV YGFVEEWSFL 240 QIFELVLADD RMMQDDAFQE IDVFRIVERC STGDSPVNVR QTMQEMMILD LWKGVVHGEE 300 SHKRTANAGR PYEWQVAFSK AKQIIDPLST GAVLCEHRQM TEVLQERGES TSRHSRATWS 360 SGEDPGQVVK FMSNLKLPKV ISVLYQ*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MGSVPVGDSL RGLRGFGEGP SSASSLVLDE EKGELVRANL VKNGRKGGGG GGVGRGGCDE  60
KAAMALKMHS EAERRRRERI NGHLAMLRSM VPCTDKLDKA ALLAEVITHV NKLKSNATEM  120
SKGLSIPSDA DEVRVEVNRD GTKTESFLIK ASLSCEDRPD LLADVRQTLH YLHLKTVQAE  180
ICTSGGRIKI AFVITCDGNP SDMENHIFIN NVQQSLKSVL DKVTSPDLVV YGFVEEWSFL  240
QIFELVLADD RMMQDDAFQE IDVFRIVERC STGDSPVNVR QTMQEMMILD LWKGVVHGEE  300
SHKRTANAGR PYEWQVAFSK AKQIIDPLST GAVLCEHRQM TEVLQERGES TSRHSRATWS  360
SGEDPGQVVK FMSNLKLPKV ISVLYQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	78	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	8e-35	bHLH family protein