PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.249
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family Trihelix
Protein Properties Length: 318aa    MW: 36397.9 Da    PI: 5.6854
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.249genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.61.6e-2352144186
                      trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74 
                                   +Wt++ v++Li++++ +++++  +       +kk++W+ vsk m ++gf++sp+qC++k+++lnkryk+++e+ +++ t++
  evm.model.AsparagusV1_01.249  52 KWTDDVVRLLINLVSLVGDDVCPNDaggkalQKKGKWKTVSKLMLDKGFNVSPQQCEDKFNDLNKRYKRLNEILGRGtTCQ 132
                                   7**************8888877543344455**********************************************77** PP

                      trihelix  75 ssstcpyfdqle 86 
                                   ++++  ++d+++
  evm.model.AsparagusV1_01.249 133 VVENPNLLDSMH 144
                                   **********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MDNPMIGSLL FPNPSTSTLN LTSDDDDHHP SSASAAGASA SKKISSPWHR MKWTDDVVRL  60
LINLVSLVGD DVCPNDAGGK ALQKKGKWKT VSKLMLDKGF NVSPQQCEDK FNDLNKRYKR  120
LNEILGRGTT CQVVENPNLL DSMHHVSEKA KEDVRKILSS KHLFYREMCA YHNGQRIPNS  180
RELEPKGNGV EDDEHDHDLK DSDEGEEDEE DDDGGFGKFG IENFGIEIDA FSPGQKREWL  240
RKRALQLIEE RVAIEAEGFA LAKRRAKWER FKRKKDWEME RERMENERLR IESERMALEV  300
RKKEMELDMM DGEHGRA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263275KRRAKWERFKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-55Trihelix family protein