PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_01.240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 277aa MW: 31210.4 Da PI: 7.0475 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l+ + + +G g+W++++++ g++R++k+c++rw +yl evm.model.AsparagusV1_01.240 14 KGLWTEEEDLKLIAYTNTHGIGNWTSVPKKAGLKRCGKSCRLRWTNYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48 | 2.9e-15 | 69 | 110 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T++E+e ++ +++ G++ W+ Ia++++ gRt++++k++w++ evm.model.AsparagusV1_01.240 69 SFTQQEEEMIITLHATIGSR-WSVIAHHLP-GRTDNDIKNHWNT 110 79******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence |
MGRPPCCDKS NVKKGLWTEE EDLKLIAYTN THGIGNWTSV PKKAGLKRCG KSCRLRWTNY 60 LRPNLKHESF TQQEEEMIIT LHATIGSRWS VIAHHLPGRT DNDIKNHWNT KLSKKLCQQG 120 IDPVTHKPIS QIKETITTLA AAAAANHHLL IHPPPFNTRV NSCLSRDLKN VLLSKPQQFY 180 EPTTATSTTL DEVYKQDKEI KWSDYLVDDV FVPNQEKELV VNGYGKEKVT SAVDEEVSST 240 VFGGEGSSSS SSFVEGILDQ GREMMMEFPE FFYDLL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 8e-73 | MYB family protein |