PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.2367

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 412aa MW: 45607.5 Da PI: 6.4134

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.2367	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.3	2e-11	229	273	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ Lr llP+ a K +Ka++L + +Y+++L evm.model.AsparagusV1_01.2367 229 HMISERKRREKLNESFHALRMLLPPgA------KKDKASVLFNTRDYLNNL 273 8899******************966......99***********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MCTDGWLNED GSRSLFDLYR ASFSSVESGV PGLAYKEGIP YIELAGSDLN NLASSQIQRQ 60 FYQEAGVKIS MQLIQQLLNE DVNLSQIPAD QNHPSSSSSS LRSLSAVSSP EYSSLLPVPT 120 ISYTHRRNAQ FPTAATDEAA IMRAMLTVIS SSAPSSSCSS SSSWTRPVGA FRPYDHGLII 180 GQNYGEPRPG MGGHRMIKTC IAVLRRMNLM SAEARMQGSR PPTSNQLHHM ISERKRREKL 240 NESFHALRML LPPGAKKDKA SVLFNTRDYL NNLKLQVSEM EERNRMLESQ LTREDEIEED 300 NGASNERVDV QIARALESSS LVQRVALRIT VRVECDMADL LLRALECLKE MGGLTLVSVN 360 ANTFSQQMGV FARLNISLQV EASDWDEQAF KEAVTRAVTD LITTRPEAGN R*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MCTDGWLNED GSRSLFDLYR ASFSSVESGV PGLAYKEGIP YIELAGSDLN NLASSQIQRQ  60
FYQEAGVKIS MQLIQQLLNE DVNLSQIPAD QNHPSSSSSS LRSLSAVSSP EYSSLLPVPT  120
ISYTHRRNAQ FPTAATDEAA IMRAMLTVIS SSAPSSSCSS SSSWTRPVGA FRPYDHGLII  180
GQNYGEPRPG MGGHRMIKTC IAVLRRMNLM SAEARMQGSR PPTSNQLHHM ISERKRREKL  240
NESFHALRML LPPGAKKDKA SVLFNTRDYL NNLKLQVSEM EERNRMLESQ LTREDEIEED  300
NGASNERVDV QIARALESSS LVQRVALRIT VRVECDMADL LLRALECLKE MGGLTLVSVN  360
ANTFSQQMGV FARLNISLQV EASDWDEQAF KEAVTRAVTD LITTRPEAGN R*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	238	ERKRRE
2	234	239	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	9e-53	bHLH family protein