PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_01.235 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 26788.6 Da PI: 5.3249 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.7e-17 | 36 | 84 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+ +++g evm.model.AsparagusV1_01.235 36 FLGVRRRP-WGRYAAEIRDPTT---KGRHWLGTFDTAQEAAIAYDRAAISMKG 84 56******.**********966...48***********************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MTSTTFLNPL SFLPSPPVPN PNERRGRRRS TEPGRFLGVR RRPWGRYAAE IRDPTTKGRH 60 WLGTFDTAQE AAIAYDRAAI SMKGAQARTN FIYVPLNVSQ TLATQNAPVL QHVSTDTTHV 120 ACSEPEPVID VANEFRFDED RGSGDLSSIV PESLLRSSSK DDASDHHNAA VGSSSGNFEE 180 NVWGGHVCNY YWPQEDLWGE DHLRALRELM VGGPVSESPS QVSQCRGMDG GDMFGLDYYS 240 MP* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 3e-36 | ERF family protein |