PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.2248
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family HD-ZIP
Protein Properties Length: 294aa    MW: 33831.4 Da    PI: 4.7078
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.2248genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1984137356
                                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                    k++++t++q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  evm.model.AsparagusV1_01.2248  84 KKRRLTSTQVQFLEKSFEIENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 137
                                    56789************************************************9 PP
2HD-ZIP_I/II129.11.8e-4183174192
                    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 
                                    ekkrrl++ qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkq+Ekdye+Lk+++d lk + + L
  evm.model.AsparagusV1_01.2248  83 EKKRRLTSTQVQFLEKSFEIENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQIEKDYEVLKKSFDVLKGDYDDL 162
                                    69****************************************************************************** PP

                    HD-ZIP_I/II  81 ekeveeLreelk 92 
                                     ke+e+L++e+ 
  evm.model.AsparagusV1_01.2248 163 LKEKEKLKAEVV 174
                                    ********9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MAGRRVYGGS EMAVLLQNEE GISSEAFQAL ISSSSSHTGI RGSRSMLNFE EICHSTSNQP  60
FYRPREPEES FDDDYDESLH QPEKKRRLTS TQVQFLEKSF EIENKLEPER KIQLAKDLGL  120
QPRQVAIWFQ NRRARWKTKQ IEKDYEVLKK SFDVLKGDYD DLLKEKEKLK AEVVHLTDKL  180
LLKENHKGVT EPLELRTTDN NITIELKNSE TPRVGVKQED HSSSDSAVSD SESPHCMDGA  240
HTDSSNAFEP DQSDISYIEE DEEVKGYHQF LKLEDNSASF EFPVEDHSLW FWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-36HD-ZIP family protein