PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.2080
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB_related
Protein Properties Length: 234aa    MW: 25633.6 Da    PI: 8.5951
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.2080genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.7e-1497141347
                                    SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    +WT+eE+ +++ + k+lG+g+W+ I+r   ++Rt+ q+ s+ qky
  evm.model.AsparagusV1_01.2080  97 PWTEEEHGKFLAGLKMLGKGDWRGISRNYVTTRTPTQVASHAQKY 141
                                    8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MARKCSHCGN EGHNSRTCSN SRSLKLFGVQ ILIASSPMKK NCSMDCLSPS YLSSSSSSPS  60
RSSASLVSSN ENSEQLTNGY LSDDLMEQAQ ERKKGVPWTE EEHGKFLAGL KMLGKGDWRG  120
ISRNYVTTRT PTQVASHAQK YFLRQSNLNN TKRRSSRFDV AGNCEAQVHV IDGMPKIKDS  180
SSSSDFRFPL LSLNVTSNGV GNDEIDLNVS QSSSLVEKHH SHLPSPDLEL AIY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-50MYB_related family protein