PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.2036
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 241aa    MW: 26888.2 Da    PI: 8.0464
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.2036genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-173279148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   rg+WT+eEd++l + vk+ G g+W+t +++ g+ R++k+c++rw +yl
  evm.model.AsparagusV1_01.2036 32 RGPWTPEEDDILSKFVKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 79
                                   89******************************99************97 PP
2Myb_DNA-binding47.44.6e-1591130748
                                    HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    +E++l+++++++lG++ W++Ia +++ gRt++++k++w++yl
  evm.model.AsparagusV1_01.2036  91 DEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTYL 130
                                    8***************.*********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MGNPNPSSSS SPRSGPKGKP TTPCCSKVGL KRGPWTPEED DILSKFVKKE GEGRWRTLPK  60
RAGLLRCGKS CRLRWMNYLR PSIKHGPIAS DEEDLILRLH RLLGNRWSLI AGRIPGRTDN  120
EIKNYWNTYL SKKLISQGID PRTHKPLNLN NPNPNPNDLQ TPIPPANPNP TSSELNSSCY  180
LSEIDINSGE DTALMDCYPE DDFSSFLDSL INDDVFVHQQ NNEKTSDQDV NAQFVNCTGK  240
*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-83MYB family protein