PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_01.195 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | C3H | ||||||||
Protein Properties | Length: 224aa MW: 25969.3 Da PI: 11.7982 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.2 | 4.5e-06 | 96 | 119 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ Cr f + C++G+ C+F+H+ evm.model.AsparagusV1_01.195 96 REATCRQFEE-DSCNRGGYCNFMHV 119 6789**9999.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MVTGVHGFIT APRSLLPSYF PTCTNALIVS PLVWTPRARL LTLPRSKNTL RISMKISLKN 60 SFKEEDQAAA ALRALQGRFY SGRPIIADFS PVTDFREATC RQFEEDSCNR GGYCNFMHVK 120 QIGRELRKKL FGRYRKSHGR RSRSRSRSPR RRDYRDNGDY RRGGGGRSGG RHGXXXXHGR 180 YHNDRDRRRE ASPRRARSPV REGSEERRAR IEQWNREREE KGE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 152 | RSRSRSPRRR |