PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.1739
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 469aa    MW: 53551.5 Da    PI: 4.9038
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.1739genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.91e-114864601374
                           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseela 79 
                                    lv+lL++cAe ++s++ ++++ +L+rl elasp+g+p+qRl ay+teALa r ar ++ l+++ pp+e  ++    +   
  evm.model.AsparagusV1_01.1739  86 LVSLLTSCAESITSNNYAAVNYILSRLGELASPRGTPIQRLSAYLTEALALRSARVWPDLFSISPPREIVDQInDYNDGI 165
                                    689*************************************************************9999876545778889 PP

                           GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeele 159
                                    al+l+ +v+Pi+kf h+t N+ + +a+eg++++HiiDf+is+GlQWp+++q+LasRp++p +lRiTg+g+    s++ le
  evm.model.AsparagusV1_01.1739 166 ALRLLDQVCPIPKFLHFTLNERLARAFEGQDKIHIIDFSISEGLQWPSFFQTLASRPHPPTHLRITGIGN----SRQDLE 241
                                    99********************************************************************....9***** PP

                           GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239
                                     tg rL+ +Ae+l+++fef++ v ++led+++++L+vk+  ++aV++vlqlh++l ++   +    ++L l++s++P ++
  evm.model.AsparagusV1_01.1739 242 DTGARLKALAESLNIQFEFHP-VIDKLEDVRYWMLHVKESYSIAVSCVLQLHKVLYDENRRAL--ANLLGLIRSTRPSML 318
                                    *********************.7********************************77666655..99************* PP

                           GRAS 240 vvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318
                                     v+e+e dhns+++ +r++++++yysa+fd+l +   +++s +r+k+E++ +g +++n++ace  er+erhe++  W+ +
  evm.model.AsparagusV1_01.1739 319 LVAEEEEDHNSPRWETRLANSMKYYSAIFDALnSCFRGEDSLARMKIEEM-FGSKVRNIIACESVERIERHEKFDVWKGM 397
                                    ********************************555667788*********.***************************** PP

                           GRAS 319 leeaGFkpvplsekaakqaklllrkvksdg...yrveee....sgslvlgWkdrpLvsvSaWr 374
                                    +e +GF+ + ++e++a  a+++l++++++g   + +e++     ++l+l W++++L++vSaW+
  evm.model.AsparagusV1_01.1739 398 MEGCGFRCIGFEEREAIRAEMILKMYSNNGdqgFGMEKRgeefCDALTLNWNNQALYTVSAWE 460
                                    *************************99655555999987444466788**************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    
MDIEPDSSVD PAKGGSTNFA PFDEDVFDFI SHKNSIIFKE KPNDQTPEYS YLSSEARKDQ  60
YLDQNRAWVR VQAQRIQTEE NQGLELVSLL TSCAESITSN NYAAVNYILS RLGELASPRG  120
TPIQRLSAYL TEALALRSAR VWPDLFSISP PREIVDQIND YNDGIALRLL DQVCPIPKFL  180
HFTLNERLAR AFEGQDKIHI IDFSISEGLQ WPSFFQTLAS RPHPPTHLRI TGIGNSRQDL  240
EDTGARLKAL AESLNIQFEF HPVIDKLEDV RYWMLHVKES YSIAVSCVLQ LHKVLYDENR  300
RALANLLGLI RSTRPSMLLV AEEEEDHNSP RWETRLANSM KYYSAIFDAL NSCFRGEDSL  360
ARMKIEEMFG SKVRNIIACE SVERIERHEK FDVWKGMMEG CGFRCIGFEE REAIRAEMIL  420
KMYSNNGDQG FGMEKRGEEF CDALTLNWNN QALYTVSAWE PVSDLHGL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-150GRAS family protein