PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.1540

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 1057aa MW: 117015 Da PI: 5.3974

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.1540	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	48	94	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l +av+++ g++Wk+Ia++++ R++ qc +rwqk+l evm.model.AsparagusV1_01.1540 48 KGQWTAEEDAILCKAVQRFKGKNWKKIAECFQ-DRSDVQCLHRWQKVL 94 799***************************.**********986 PP
2	Myb_DNA-binding	59.4	8.2e-19	100	146	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++v v+++G++ W+ Ia+ ++ gR +kqc++rw+++l evm.model.AsparagusV1_01.1540 100 KGPWTKEEDDIIVAMVNEHGPKKWSQIAQSLP-GRIGKQCRERWHNHL 146 79****************************.***********97 PP
3	Myb_DNA-binding	49.1	1.3e-15	152	194	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++ +G++ W+ ++ ++ gRt++ +k++w+ evm.model.AsparagusV1_01.1540 152 KEAWTQEEEIALIHAHQIYGNK-WAELSKFLP-GRTDNAIKNHWH 194 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1057 aa Download sequence
MTIDNGKLPE RSETSTSDAA ATDGRCEGFQ RQRPFHGRVT GPTRRSTKGQ WTAEEDAILC 60 KAVQRFKGKN WKKIAECFQD RSDVQCLHRW QKVLNPELVK GPWTKEEDDI IVAMVNEHGP 120 KKWSQIAQSL PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE IALIHAHQIY GNKWAELSKF 180 LPGRTDNAIK NHWHSSVKKK LDYYQSSGLL AQFQGLPSVD ITRHMDPSSA MNRLKIEESI 240 LRDKPEFDDS SECSQKLAQT ISPQSHCELN ANLTVRENFK PDEDSVKMEA TNTEEHHEYY 300 ASLGDAAYAP ELHCSWGLIS VIGSDQISLG KDEVSENMAC RTVSNRTSHP SAEISQKSQT 360 LMKMAEHVPS YADANYGHES KLFQDEFREK YSTSTTSMFG SEQQKLSVSE ADRSTSVVFE 420 GMNSDFAFGG PIFSSGTVNM NCFQETVNWQ SEIQSFSCCV NPSSSSQMLF PAISSDAAGV 480 PYHESLMVAV SPSFIGQNER KLLGKSSNVT TAGAPDLEVT TCSHDEFVSS SSPSMAAGDS 540 DRSMISLPSY INQEKETRKQ TFMEMLRFDH TGTSENLALS EENGNEQAEC QKSGGLFYEP 600 PRVPTFELPF FSCDVISSSE QQEFSPLGIR KIMMSSTPYS IWDSPSPDDS PDAILKSAAK 660 HFMFTPSIMK KRQRELLSPL QEKRTDKKTW RDTKPGFMYT SCLSEELGED NADRISSCSA 720 EDFLVSPPEQ KKDSRASAES QDTSVQEGSS SWRGSITNSL QEKMEVSVTK IKQCDPFAFI 780 QQPAGILTER NINDQLLYIS PENRRGSLGD AGNSSENLSA RFLGNLSKKD GENAYSRPLT 840 DSCTLLSSDA RESNQVCGSV SVTSMQCASS SPSSQVSAGK FIGEHKNLNI PCSFADTPSI 900 KRGIESPSAW KSPWFMSSLL PGHGIGIDPF HEEIPYYMSP GDRTYDAIGL MRQLNEQSAA 960 AVAEAREVLA SGKPDADFVK RCASSEKLLK GHQSGKGTDI CDSMSPNNVA LQVEGRILDF 1020 SECASPGKKI ENSKVSSVEF SESFSSQSSY LLKSCR*

Sequence ? help Back to Top

Protein Sequence Length: 1057 aa Download sequence

MTIDNGKLPE RSETSTSDAA ATDGRCEGFQ RQRPFHGRVT GPTRRSTKGQ WTAEEDAILC  60
KAVQRFKGKN WKKIAECFQD RSDVQCLHRW QKVLNPELVK GPWTKEEDDI IVAMVNEHGP  120
KKWSQIAQSL PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE IALIHAHQIY GNKWAELSKF  180
LPGRTDNAIK NHWHSSVKKK LDYYQSSGLL AQFQGLPSVD ITRHMDPSSA MNRLKIEESI  240
LRDKPEFDDS SECSQKLAQT ISPQSHCELN ANLTVRENFK PDEDSVKMEA TNTEEHHEYY  300
ASLGDAAYAP ELHCSWGLIS VIGSDQISLG KDEVSENMAC RTVSNRTSHP SAEISQKSQT  360
LMKMAEHVPS YADANYGHES KLFQDEFREK YSTSTTSMFG SEQQKLSVSE ADRSTSVVFE  420
GMNSDFAFGG PIFSSGTVNM NCFQETVNWQ SEIQSFSCCV NPSSSSQMLF PAISSDAAGV  480
PYHESLMVAV SPSFIGQNER KLLGKSSNVT TAGAPDLEVT TCSHDEFVSS SSPSMAAGDS  540
DRSMISLPSY INQEKETRKQ TFMEMLRFDH TGTSENLALS EENGNEQAEC QKSGGLFYEP  600
PRVPTFELPF FSCDVISSSE QQEFSPLGIR KIMMSSTPYS IWDSPSPDDS PDAILKSAAK  660
HFMFTPSIMK KRQRELLSPL QEKRTDKKTW RDTKPGFMYT SCLSEELGED NADRISSCSA  720
EDFLVSPPEQ KKDSRASAES QDTSVQEGSS SWRGSITNSL QEKMEVSVTK IKQCDPFAFI  780
QQPAGILTER NINDQLLYIS PENRRGSLGD AGNSSENLSA RFLGNLSKKD GENAYSRPLT  840
DSCTLLSSDA RESNQVCGSV SVTSMQCASS SPSSQVSAGK FIGEHKNLNI PCSFADTPSI  900
KRGIESPSAW KSPWFMSSLL PGHGIGIDPF HEEIPYYMSP GDRTYDAIGL MRQLNEQSAA  960
AVAEAREVLA SGKPDADFVK RCASSEKLLK GHQSGKGTDI CDSMSPNNVA LQVEGRILDF  1020
SECASPGKKI ENSKVSSVEF SESFSSQSSY LLKSCR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	1e-103	MYB family protein