PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_01.1472 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | bHLH | ||||||||
Protein Properties | Length: 160aa MW: 18351.3 Da PI: 8.9871 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.3 | 2.1e-16 | 51 | 96 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRdriN+++ +L++l+P++ K +Ka++L +++eY+k+Lq evm.model.AsparagusV1_01.1472 51 HNQSERKRRDRINQKIRTLQKLVPNS-----NKTDKASMLDEVIEYLKQLQ 96 *************************7.....5******************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence |
MVVADEHDSV CHSRRSLSQR GMAGEEDEKV IEECTVRSTV STKRSRAAAI HNQSERKRRD 60 RINQKIRTLQ KLVPNSNKTD KASMLDEVIE YLKQLQAQIS MMSRMSSMAP PMLMPMGMQQ 120 FQMSMMAQMA QMGLAGMGMM DMGSMGRDWK CWWWWCEYG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 60 | ERKRRD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 2e-37 | bHLH family protein |