PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.1429
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 318aa    MW: 35787.1 Da    PI: 4.8077
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.1429genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171663148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT+eEd +l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  evm.model.AsparagusV1_01.1429 16 KGSWTPEEDMRLIAYIHKYGHGNWRALPKFAGLLRCGKSCRLRWINYL 63
                                   799*****************************99************97 PP
2Myb_DNA-binding51.72e-1669114148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    rg++T+eE++ +++++ +lG++ W++Ia++++ gRt++++k+ w+++l
  evm.model.AsparagusV1_01.1429  69 RGNFTKEEEDTIIKLHGLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114
                                    89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MGRGRAPCCA KVGLNKGSWT PEEDMRLIAY IHKYGHGNWR ALPKFAGLLR CGKSCRLRWI  60
NYLRPDIKRG NFTKEEEDTI IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRLAP  120
KEEKSGENPE EIPSSPSSIT TASVSVSCSD EGESKKEKEQ NDKEQHEAMD DKIDKIELSV  180
EPNLDMWDML EDSSYSEITH ENVEPPSSDV RVKGDDGNTL VDLPEILIEP EIWNMINDDL  240
NIALTRDTTA AATPRTHHQN IKAKGEDEKE RWLQYLEKEL DSWEECAAAT AQVEGADPVA  300
SYFQALQASP SPLDILY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.13e-67MYB family protein