PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_01.1238 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 223aa MW: 25135.3 Da PI: 6.1365 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37 | 7.7e-12 | 14 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv +g +W+ +++ g++R++k+c++rw +yl evm.model.AsparagusV1_01.1238 14 KGPWTAEEDEKLVGFMMSENSGhcSWRMVPKLAGLRRCGKSCRLRWTNYL 63 79***********98887777778************************97 PP | |||||||
2 | Myb_DNA-binding | 47.6 | 3.8e-15 | 73 | 112 | 5 | 46 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ E++l +d++ +lG++ W+ Ia++++ gRt++++k++w++ evm.model.AsparagusV1_01.1238 73 SELEEQLVIDLHSRLGNR-WSQIAAKLP-GRTDNEIKNHWNT 112 677***************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MGRRPCCDKL GVKKGPWTAE EDEKLVGFMM SENSGHCSWR MVPKLAGLRR CGKSCRLRWT 60 NYLRPDLKRG LLSELEEQLV IDLHSRLGNR WSQIAAKLPG RTDNEIKNHW NTNIKKKLIK 120 MGIDPITHQP LIKQESIKTT NSTEVEAPAE AQTSSSENTC QVENCSNSEN NSSDLLASSI 180 WEVGLQFEDA SYGKWASPWD DSCDWLTDYQ ELGTVDFGKD SL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22680.1 | 6e-80 | MYB family protein |