PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_01.1050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | WOX | ||||||||
Protein Properties | Length: 261aa MW: 28958.2 Da PI: 7.0598 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67 | 2.6e-21 | 99 | 159 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ evm.model.AsparagusV1_01.1050 99 RQRWTPTPIQLQILESIFDQgNGTPSKQKIKEITNELtqhgQISETNVYNWFQNRRARSKR 159 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 101.1 | 8.2e-33 | 98 | 161 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq evm.model.AsparagusV1_01.1050 98 ARQRWTPTPIQLQILESIFDQGNGTPSKQKIKEITNELTQHGQISETNVYNWFQNRRARSKRKQ 161 689***********************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
METQNPSPSP SPSAVKTNAV NGSNRERSLG DGALYVKVMT DEQMEVLRRQ ISVYASICEQ 60 LVEMHKAVTA HNDSIAGMRL GNLYCDPLMS TGGHKIAARQ RWTPTPIQLQ ILESIFDQGN 120 GTPSKQKIKE ITNELTQHGQ ISETNVYNWF QNRRARSKRK QMTNASNYPE SEAEGENESP 180 KEKKAKLHNG DDSSYNNTPQ DPKRIQGVSP SNSKSSGSLG QMSFYENILS NPRMDQLMGK 240 MEVPGSYSPF ESAESYDFMG * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 161 | RRARSKRKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 9e-74 | WOX family protein |