PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.1932
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family AP2
Protein Properties Length: 553aa    MW: 61710.7 Da    PI: 6.5098
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.1932genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.31.1e-14228287155
                            AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                    s y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +++Aa+a++ a++k++g
  evm.model.AsparagusV1_04.1932 228 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 287
                                    57*******************999975578446**********99*************98 PP
2AP247.54.5e-15330381155
                            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  evm.model.AsparagusV1_04.1932 330 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAEAYDIAAIKFRG 381
                                    57****************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    
MLPFFPSQLL PTSSTLSNPN IFLPLLSLTL QFFFLFLLFF ISPSSMGSMN NWLGFSLSPT  60
ELPPSSHYPY QAHPSPTTVT SNCFSFSTDH SASDNNHQTP LVDIDFLSSA PHHQHQEWNM  120
KNCELSMLVG SDNKSINNSE PKMGDFLSGQ SYLYNEGYPL QLPVQAVMPT MPNINAEESQ  180
SSSNLPLAIT AGVGVEERLA LENKKDDEQC GAKEVTKKSV ETFGQRTSIY RGVTRHRWTG  240
RYEAHLWDNS CKREGQTRKG RQVYLGGYDK EDKAARAYDL AALKYWGATT TTNFPISNYV  300
KEIEEMKHMT RQEYIASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  360
TFTTQEEAAE AYDIAAIKFR GLNAITNFEM SRYDVKSILE SSNLPIGPST KRLKDSSSSD  420
NSSTITEGIS NYGWPPTLAF QQSQYPYNNY QHSWCKQEED YSTMPAQTLQ NLNSYGIGSC  480
STLLELGTGM SSDVYYSGRN FPSVLGWSDS YKNAYYEQSS GCSALMEASA QGIAQANVCN  540
GAPPLFTVWD ES*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-127AP2 family protein