PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.1641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | GATA | ||||||||
Protein Properties | Length: 251aa MW: 27448.1 Da PI: 7.7145 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48.7 | 1e-15 | 140 | 176 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ evm.model.AsparagusV1_03.1641 140 CQNCGISEklTPAMRRGPAGPRSLCNACGLMWANKGT 176 **********************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence |
MQLMGSNSNQ LTLLFQGEVY VFESVTPEKV QAVLLLLGGC ELPPGVANAG FDRGFDDILR 60 RTNMPARRMA SLMRFREKRK ERNFDKKIRY TVRKEVALRM QRRKGQFVGK ANPQEGALAS 120 TSGDPDQNLN QDETRQDNKC QNCGISEKLT PAMRRGPAGP RSLCNACGLM WANKGTLRCP 180 SKVPKCSTSD PAHPDEHGEG INQAVVVGDG KMLLNNSNDD DSAAAPTEIE AADIPSVVAN 240 EMQEDLKAEL * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 2e-57 | GATA family protein |