PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.2377
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GATA
Protein Properties Length: 294aa    MW: 32767.9 Da    PI: 10.2817
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.2377genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-19156189134
                           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                    Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  evm.model.AsparagusV1_01.2377 156 CSDCNTTKTPLWRSGPSGPKSLCNACGIRQRKAR 189
                                    *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MTPLEGDHDP SHFHPFTLQT HDPTSSIPYS FFLNTQQVIQ EANGAHNLLH HHQQKQEFID  60
QVMNIQGSSN FTVSFSTNTT NSIDDIVKDE KKSSKWMSSK RRLMRKMMNP DGIITKKPRR  120
SRHLLQDQQH HEQLAQESSS SNTNNSSSSD GVVRVCSDCN TTKTPLWRSG PSGPKSLCNA  180
CGIRQRKARR ALAAAAAVSS GLIPLASRAK DRKSDHKEYS ESDRNVPFKK RCRFSTAGGD  240
SAQKQIKKKK EKRSFDDIVI SLSKSSAFHR VFPQDEKDAA ILLMALSCGL VCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229250KKRCRFSTAGGDSAQKQIKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-17GATA family protein