PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551690.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CAMTA

Protein Properties

Length: 1070aa MW: 120669 Da PI: 6.4617

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551690.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.9	6.8e-52	14	129	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e + rwlk+ e+ iL+n+e++++++e++++p sgsl+L+nr++ r+frkDG+ w+kk+dg++v E+he+LKvg+v++l+cyYah+e np fqr XP_028551690.1 14 QEaQIRWLKPLEVFFILKNHERYQIEQETPEKPLSGSLFLFNRRVHRFFRKDGHVWRKKRDGRAVGEAHERLKVGNVDALNCYYAHGELNPFFQR 108 55589**************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylev 117 r+yw+L+ ++++ivlvhy+ev XP_028551690.1 109 RSYWMLDPAYDHIVLVHYREV 129 *****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1070 aa Download sequence
MLAGSSFDYD KLRQEAQIRW LKPLEVFFIL KNHERYQIEQ ETPEKPLSGS LFLFNRRVHR 60 FFRKDGHVWR KKRDGRAVGE AHERLKVGNV DALNCYYAHG ELNPFFQRRS YWMLDPAYDH 120 IVLVHYREVS EGRNMPQTVS QQPQEQLTYI NGSSNVNNIQ FQRFPSAYGE IYESYQISGS 180 SVSGEVNSKY VGKNLDADCL NMTNSSENSD LSSQSNVNQA LRELAEQLSL DKCDNKIFED 240 LFPAHTNECE KLENPAFPDN EKGCPFQSFH ENLNPVDCST YDQGGNGKQK SQSSAFHHSI 300 TRKNSPSWND MLKLSSSSTG INADLRVIDS VALSLVPQPS CYSSNATVNH HCGGNALKLE 360 SDFEQFSSEE DIFGVPFDWL EQFSLRQPYQ AVKNTELTSS GSDLSLQLCE ANRILFGFDG 420 LESPNSAACL AGAPCTTTGA TSSGSNSKLS STPKESIIEW MGTTDLPVEK TSYSFDLRGT 480 WFDQGQHGTV VQKQLFRIRE ISPEWSFSFA KTKVLIVGDF LCNPLSYAWA VMFGDVEVPA 540 EIVQQGVLRC QAPEQITGKV TLCVTSRNKE SCSEAREFEF RPKPATTSME TLHNVNATKN 600 SEELLLLVKF VRILLFRHHD LSVSEGAAQT EAKYHRKFKE AEEEWLQIID QLQAGCEISS 660 GLMDWVLQEL IKDKFQQWYL SKISPIKDEN FLLSKEEQGI IHMISGLGYE WALNPLLDIG 720 VGINFRDANG WTALHWAAHL GREKMAAALL AAGALAGAVT DPRPSDPVGK TAGAIAAASG 780 HKGLAGYLSE ADLTSHLSSL TMEACEISKG SAAVEAEKAV ESISERTAQL DGDGTEDDLS 840 LKDSLAALRN TAQAAARIQA AFRAHSFRKR HEMAAGNFDE YGLTSKDIYG LISSSKNQRA 900 THSYRDQKFD KAALSIQKKY RGWKGRKDFL TVRQHVVKIQ AHVRGHQTRK KYREFLWTVG 960 VLEKVVLRWR RRGAGLRGFR PEPILADKEE EEDIVKVFRK QKVDDALDQA YSRVLSMVES 1020 PRARQQYRRM LESYHKVKAE QGCAEEAIPQ LQDLEFMQDD ELQYWIRYYQ

Sequence ? help Back to Top

Protein Sequence Length: 1070 aa Download sequence

MLAGSSFDYD KLRQEAQIRW LKPLEVFFIL KNHERYQIEQ ETPEKPLSGS LFLFNRRVHR  60
FFRKDGHVWR KKRDGRAVGE AHERLKVGNV DALNCYYAHG ELNPFFQRRS YWMLDPAYDH  120
IVLVHYREVS EGRNMPQTVS QQPQEQLTYI NGSSNVNNIQ FQRFPSAYGE IYESYQISGS  180
SVSGEVNSKY VGKNLDADCL NMTNSSENSD LSSQSNVNQA LRELAEQLSL DKCDNKIFED  240
LFPAHTNECE KLENPAFPDN EKGCPFQSFH ENLNPVDCST YDQGGNGKQK SQSSAFHHSI  300
TRKNSPSWND MLKLSSSSTG INADLRVIDS VALSLVPQPS CYSSNATVNH HCGGNALKLE  360
SDFEQFSSEE DIFGVPFDWL EQFSLRQPYQ AVKNTELTSS GSDLSLQLCE ANRILFGFDG  420
LESPNSAACL AGAPCTTTGA TSSGSNSKLS STPKESIIEW MGTTDLPVEK TSYSFDLRGT  480
WFDQGQHGTV VQKQLFRIRE ISPEWSFSFA KTKVLIVGDF LCNPLSYAWA VMFGDVEVPA  540
EIVQQGVLRC QAPEQITGKV TLCVTSRNKE SCSEAREFEF RPKPATTSME TLHNVNATKN  600
SEELLLLVKF VRILLFRHHD LSVSEGAAQT EAKYHRKFKE AEEEWLQIID QLQAGCEISS  660
GLMDWVLQEL IKDKFQQWYL SKISPIKDEN FLLSKEEQGI IHMISGLGYE WALNPLLDIG  720
VGINFRDANG WTALHWAAHL GREKMAAALL AAGALAGAVT DPRPSDPVGK TAGAIAAASG  780
HKGLAGYLSE ADLTSHLSSL TMEACEISKG SAAVEAEKAV ESISERTAQL DGDGTEDDLS  840
LKDSLAALRN TAQAAARIQA AFRAHSFRKR HEMAAGNFDE YGLTSKDIYG LISSSKNQRA  900
THSYRDQKFD KAALSIQKKY RGWKGRKDFL TVRQHVVKIQ AHVRGHQTRK KYREFLWTVG  960
VLEKVVLRWR RRGAGLRGFR PEPILADKEE EEDIVKVFRK QKVDDALDQA YSRVLSMVES  1020
PRARQQYRRM LESYHKVKAE QGCAEEAIPQ LQDLEFMQDD ELQYWIRYYQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-128	CAMTA family protein