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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028551170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 21374.5 Da PI: 8.3725 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.2 | 1.2e-42 | 29 | 128 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++dCv+apyf a+qp+kf vh++FGasnv+kllk++p+++reda++sl+yeA++r+rdPvyG+vgvi+ l+++l++ + el+ XP_028551170.1 29 PCAACKFLRRKCQPDCVFAPYFLADQPQKFISVHRVFGASNVTKLLKEIPPKDREDAVNSLAYEADMRIRDPVYGCVGVISILHHELRKIQLELS 123 7*********************************************************************************************9 PP DUF260 96 llkee 100 +++e XP_028551170.1 124 IARSE 128 99886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence |
MTSLTPPSSF PPPTPPPCAS ANGATASSPC AACKFLRRKC QPDCVFAPYF LADQPQKFIS 60 VHRVFGASNV TKLLKEIPPK DREDAVNSLA YEADMRIRDP VYGCVGVISI LHHELRKIQL 120 ELSIARSELA RYQFNPPPSP AEISTQYQFG LWPGNQLGFD APATPASASS PAVAFGMNIG 180 GHLMIRAPGA RAAGADGVGP A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 1e-53 | LBD family protein |