PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028551170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LBD
Protein Properties Length: 201aa    MW: 21374.5 Da    PI: 8.3725
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028551170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.21.2e-42291281100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC++dCv+apyf a+qp+kf  vh++FGasnv+kllk++p+++reda++sl+yeA++r+rdPvyG+vgvi+ l+++l++ + el+
  XP_028551170.1  29 PCAACKFLRRKCQPDCVFAPYFLADQPQKFISVHRVFGASNVTKLLKEIPPKDREDAVNSLAYEADMRIRDPVYGCVGVISILHHELRKIQLELS 123
                     7*********************************************************************************************9 PP

          DUF260  96 llkee 100
                      +++e
  XP_028551170.1 124 IARSE 128
                     99886 PP

Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MTSLTPPSSF PPPTPPPCAS ANGATASSPC AACKFLRRKC QPDCVFAPYF LADQPQKFIS  60
VHRVFGASNV TKLLKEIPPK DREDAVNSLA YEADMRIRDP VYGCVGVISI LHHELRKIQL  120
ELSIARSELA RYQFNPPPSP AEISTQYQFG LWPGNQLGFD APATPASASS PAVAFGMNIG  180
GHLMIRAPGA RAAGADGVGP A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.31e-53LBD family protein