PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028548187.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CAMTA

Protein Properties

Length: 871aa MW: 97999.5 Da PI: 7.1558

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028548187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	36.1	1.2e-11	34	70	74	110
CG-1 74 KvggvevlycyYahseenptfqrrcywlLeeelekiv 110 K+g+ e +++yYa++e++p+f rrcywlL++++++ XP_028548187.1 34 KIGNEERIHVYYARGEDDPNFYRRCYWLLDNNHSSHQ 70 99*****************************987655 PP

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence
MKGTTSSWGC PLSSPMPCHL PITYELSVPA ISPKIGNEER IHVYYARGED DPNFYRRCYW 60 LLDNNHSSHQ LPSHVANVFI SWKLEHIVLV HYRQTLENVP ALVEYKEPFY LAGMMSDSSP 120 LTPVNSISGS MQSDSSGSAA MSEEINSRED QAIFTGSGIF LSKKETGLHI KELSLHDINN 180 LGWAELALAS EYIEPCMGKA DGALDSSDSV QFKAISSIHD QGGTEYLETP DDQGLPSVLL 240 NTSNLKMMSQ IVSDGPKMFD DDIFNNKNGF EQWDSLKKDS FGTLEAPLIS NGNGSNLFRA 300 MDQSSVLQQI FTINEVSPEW GYSTVETKVV VIGNFAASHK HLESSSIYCV FGELCVGMQM 360 VQSGVYRCIA LPQMPGKVDA FLSLDGQTPI SQVITFHYRH VPAVQLNDGV TSKDANGEEK 420 FRDVMAQKRL AHLLFSTSDS MPLFSSKMLP KAIKEAQRVA QITSPYIEND WKELLKLDCK 480 NEITFYQACE DLLELVFKNK LQEWLMKKIA EGCKITTRDS QGQGVIHLCT ILDYTWAVSL 540 YSLSGFSLDF RDAYGWTALH WAAHLGREKM VATLIYAGAN PSLVTDPTPE NPGGLTAADL 600 ASKGGHDGLA AYLAEKGLTA HFEAMSLSGN VPSSVLRVSK DQVNLEDLHY EMLSEQEVCL 660 KESLEAYRNA ADAADRIQAA FRERTLKLQT ESVQLANPQM EASQIVAALR IQHAYRNYNR 720 RRLMKAAARI QSHFRTWRIR KDFLNMRRQV IKIQAAVRGH QVRKQYRKIV WSVGVLEKAV 780 LRWRLKRKGL RGMQVKAMEV GRANNLEEST STEEDFFKIS RKHAEERVQR SVVRVQSMFR 840 SYQAQQQYRR LKLAQEQAKL EFSLNGDSKF L

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence

MKGTTSSWGC PLSSPMPCHL PITYELSVPA ISPKIGNEER IHVYYARGED DPNFYRRCYW  60
LLDNNHSSHQ LPSHVANVFI SWKLEHIVLV HYRQTLENVP ALVEYKEPFY LAGMMSDSSP  120
LTPVNSISGS MQSDSSGSAA MSEEINSRED QAIFTGSGIF LSKKETGLHI KELSLHDINN  180
LGWAELALAS EYIEPCMGKA DGALDSSDSV QFKAISSIHD QGGTEYLETP DDQGLPSVLL  240
NTSNLKMMSQ IVSDGPKMFD DDIFNNKNGF EQWDSLKKDS FGTLEAPLIS NGNGSNLFRA  300
MDQSSVLQQI FTINEVSPEW GYSTVETKVV VIGNFAASHK HLESSSIYCV FGELCVGMQM  360
VQSGVYRCIA LPQMPGKVDA FLSLDGQTPI SQVITFHYRH VPAVQLNDGV TSKDANGEEK  420
FRDVMAQKRL AHLLFSTSDS MPLFSSKMLP KAIKEAQRVA QITSPYIEND WKELLKLDCK  480
NEITFYQACE DLLELVFKNK LQEWLMKKIA EGCKITTRDS QGQGVIHLCT ILDYTWAVSL  540
YSLSGFSLDF RDAYGWTALH WAAHLGREKM VATLIYAGAN PSLVTDPTPE NPGGLTAADL  600
ASKGGHDGLA AYLAEKGLTA HFEAMSLSGN VPSSVLRVSK DQVNLEDLHY EMLSEQEVCL  660
KESLEAYRNA ADAADRIQAA FRERTLKLQT ESVQLANPQM EASQIVAALR IQHAYRNYNR  720
RRLMKAAARI QSHFRTWRIR KDFLNMRRQV IKIQAAVRGH QVRKQYRKIV WSVGVLEKAV  780
LRWRLKRKGL RGMQVKAMEV GRANNLEEST STEEDFFKIS RKHAEERVQR SVVRVQSMFR  840
SYQAQQQYRR LKLAQEQAKL EFSLNGDSKF L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	0.0	CAMTA family protein