PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023919899.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 29233.2 Da    PI: 7.2162
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023919899.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.23.4e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +rien + rqvtf+kRr g++KK +ELSvLCda++ +++fss+gklyey+s
  XP_023919899.1  9 SRIENRTTRQVTFAKRRVGLFKKTHELSVLCDAQIGIMVFSSSGKLYEYCS 59
                    59***********************************************96 PP

2K-box61.53.3e-2176167696
           K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     g++   e++ + +q el+++++e+ +L+ ++ ++ GedL+s ++ +L++Leq+Le++++k+R++  ell +qi++l++k k+l++en++L +
  XP_023919899.1  76 GTDqIPESNDQLMQGELKRMQRETLSLELSLQRYTGEDLNSVQFGDLHELEQKLENAVNKVRERMFELLQQQIDNLRRKGKMLHDENENLYH 167
                     455578999********************************************************************************965 PP

Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MGRRRVSISR IENRTTRQVT FAKRRVGLFK KTHELSVLCD AQIGIMVFSS SGKLYEYCSD  60
TSGMEHIIRR YKIATGTDQI PESNDQLMQG ELKRMQRETL SLELSLQRYT GEDLNSVQFG  120
DLHELEQKLE NAVNKVRERM FELLQQQIDN LRRKGKMLHD ENENLYHLNQ LKENQVALDH  180
QAALDQHQQM TMVPKASEDR RRVLESFPFS GEEQPSSVLP QATLPPLFNP YRLQPTQPNL  240
QDFSLQLPDY V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157LRRKGKM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.29e-56MIKC_MADS family protein