PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023919899.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 251aa MW: 29233.2 Da PI: 7.2162 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.2 | 3.4e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rien + rqvtf+kRr g++KK +ELSvLCda++ +++fss+gklyey+s XP_023919899.1 9 SRIENRTTRQVTFAKRRVGLFKKTHELSVLCDAQIGIMVFSSSGKLYEYCS 59 59***********************************************96 PP | |||||||
2 | K-box | 61.5 | 3.3e-21 | 76 | 167 | 6 | 96 |
K-box 6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 g++ e++ + +q el+++++e+ +L+ ++ ++ GedL+s ++ +L++Leq+Le++++k+R++ ell +qi++l++k k+l++en++L + XP_023919899.1 76 GTDqIPESNDQLMQGELKRMQRETLSLELSLQRYTGEDLNSVQFGDLHELEQKLENAVNKVRERMFELLQQQIDNLRRKGKMLHDENENLYH 167 455578999********************************************************************************965 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence |
MGRRRVSISR IENRTTRQVT FAKRRVGLFK KTHELSVLCD AQIGIMVFSS SGKLYEYCSD 60 TSGMEHIIRR YKIATGTDQI PESNDQLMQG ELKRMQRETL SLELSLQRYT GEDLNSVQFG 120 DLHELEQKLE NAVNKVRERM FELLQQQIDN LRRKGKMLHD ENENLYHLNQ LKENQVALDH 180 QAALDQHQQM TMVPKASEDR RRVLESFPFS GEEQPSSVLP QATLPPLFNP YRLQPTQPNL 240 QDFSLQLPDY V |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 157 | LRRKGKM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 9e-56 | MIKC_MADS family protein |