PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022955282.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MIKC_MADS

Protein Properties

Length: 262aa MW: 29367 Da PI: 9.3207

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022955282.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.7	9.8e-31	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gkl+e+s XP_022955282.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFS 58 79***********************************************8 PP
2	K-box	89.8	5.1e-30	91	175	16	100
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ ++ +Lk+ +e +q++qR+llGedL++L+ keL+qLe+qLe+sl++iRs+K++ l+eq+ elq+ke++l e+n++Lrkklee XP_022955282.1 91 QSFDDYLNLKATVELMQQSQRNLLGEDLGPLNAKELEQLEHQLETSLERIRSTKTRTLMEQLAELQRKEHMLVEDNRSLRKKLEE 175 5557899***************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLFEFSGG 60 SSMTRTLEKY RRCSYDIRDG ARHLNNNGQP QSFDDYLNLK ATVELMQQSQ RNLLGEDLGP 120 LNAKELEQLE HQLETSLERI RSTKTRTLME QLAELQRKEH MLVEDNRSLR KKLEESSAQV 180 AAASAAWGWE GGAGGHSMDY PSRIASQSDA FFYPITQPIP TLQIGYNSVG SVGLSNNNTN 240 NNNSNAGAPP QNGNGFQLGW ML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	2e-75	MIKC_MADS family protein