PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022951352.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25295.9 Da    PI: 7.4444
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022951352.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.48.2e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr g++KKAeELSvLCdaeva+++fs tgkl+e+ss
  XP_022951352.1  9 KKISNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALLVFSATGKLFEFSS 59
                    68***********************************************96 PP
2K-box49.81.5e-17891701798
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +  +a+L ke   + + +R++ GedL+ L+l++L+qLe  Le +l ++ ++K++ ++++i+ l  k  +l een++L++++
  XP_022951352.1  89 ENSSHARLTKEAADMSHRLRQMRGEDLQGLNLEDLKQLEGVLEVGLARVIQTKERKIMNEINALELKGARLMEENRTLNRQM 170
                     566789************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MAREKIKIKK ISNLTARQVT FSKRRRGLFK KAEELSVLCD AEVALLVFSA TGKLFEFSSS  60
SVKDVITRYN LHSTNLGELE DPSLDLQLEN SSHARLTKEA ADMSHRLRQM RGEDLQGLNL  120
EDLKQLEGVL EVGLARVIQT KERKIMNEIN ALELKGARLM EENRTLNRQM IRLSNQRRPL  180
LVVSDVPVPE EGVSSDSAAN VYSCNSGPLA DDDSSDTSLK LGLACPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.16e-91MIKC_MADS family protein