PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022936972.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 554aa MW: 62003.8 Da PI: 8.9611

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022936972.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.3	2.9e-16	230	289	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_022936972.1 230 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 289 78*****************988886678446***********************98 PP
2	AP2	50.9	3.7e-16	332	383	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g XP_022936972.1 332 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 383 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence
MTMEVTSESQ QHSVYHHQSQ PTPAIAISNT MSNSFSASQH YNGDFLSPLS VMPLKSDGSL 60 CIMDSISRSQ TPETLPNISP KLEDFLGGAT HGREAATALS LDSRYYNQNP EANSERQQRI 120 LLHSERYYSG MFHYPAEDVN KESHIASYCS EIRQDMEQRI NGCFGGGRNC QDLQTLSLSM 180 SPGSQSSCVT TPSQISQSGQ ATMETKKRAL ADRKQPVHRK SIDTFGQRTS QYRGVTRHRW 240 TGRYEAHLWD NSCKKEGQTR KGRQVYLGGY DMEEKAARAY DLAALKYWGP STHLNFPLKN 300 YELQIEEMMN MNRQEYVAHL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY 360 LGTFGTQEEA AEAYDIAAIK FRGINAVTNF DTSRYDVERI MASSSLLSGE FARRNRDHKP 420 TNAIKHEEPK QNISRTDPAE IYNNNLDWRT VFHENLLLDP SASVESIDQK SMASSGGYLN 480 NLIGVVVGSS KYKAQFSNAS SVVSSLSSSR ETSPDKPNGS SSVPFGSNGR SIWKQMRPAP 540 ISLPVESTVG WNDA

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence

MTMEVTSESQ QHSVYHHQSQ PTPAIAISNT MSNSFSASQH YNGDFLSPLS VMPLKSDGSL  60
CIMDSISRSQ TPETLPNISP KLEDFLGGAT HGREAATALS LDSRYYNQNP EANSERQQRI  120
LLHSERYYSG MFHYPAEDVN KESHIASYCS EIRQDMEQRI NGCFGGGRNC QDLQTLSLSM  180
SPGSQSSCVT TPSQISQSGQ ATMETKKRAL ADRKQPVHRK SIDTFGQRTS QYRGVTRHRW  240
TGRYEAHLWD NSCKKEGQTR KGRQVYLGGY DMEEKAARAY DLAALKYWGP STHLNFPLKN  300
YELQIEEMMN MNRQEYVAHL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY  360
LGTFGTQEEA AEAYDIAAIK FRGINAVTNF DTSRYDVERI MASSSLLSGE FARRNRDHKP  420
TNAIKHEEPK QNISRTDPAE IYNNNLDWRT VFHENLLLDP SASVESIDQK SMASSGGYLN  480
NLIGVVVGSS KYKAQFSNAS SVVSSLSSSR ETSPDKPNGS SSVPFGSNGR SIWKQMRPAP  540
ISLPVESTVG WNDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-142	AP2 family protein