PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022935074.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 475aa MW: 52137.7 Da PI: 6.6478

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022935074.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	5.9e-17	160	209	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_022935074.1 160 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 209 78*****************......55**********************997 PP
2	AP2	43	1.1e-13	252	302	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a++k +g XP_022935074.1 252 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAALKCNG 302 89******.7**5553..2.26******99********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MAFAERGASN PMLDLNLQVV SSDSVELVTE RLFQFPPIRM ESAGSFNGDL SASTTGDEDS 60 SSNADEAFPF AFGKDCAVQE NLTAKSLCIS DNQRDQTMEL FPLTGGLSSG SSSQKQWLEV 120 SPPEFHYWGG ALERRITAPP GQQQHQPMRK NRRGPRSRSS QYRGVTFYRR TGRWESHIWD 180 CGKQVYLGGF DTAHAAARAY DRAAIKFRGV DADINFNVSD YDEDIKQMSN FTKEEFVHIL 240 RRHSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKYIYL GLFDSEIEAA RAYDKAALKC 300 NGKEAVTNFE PSSYVAEMAS EAAGTADNNQ ILDLNLGIAP PNLCEAQSES IAMFERRAMP 360 ENSVSAAIRS SHSEPYSFAV PSNYHSPWSV SNSSFFPNSR ERATEMRMGV GVGVGSWEWQ 420 IHGHPSGTTS VPLFSAAASS GFPSSSSSSS SSTAIPSASS GVGETHFPAI FYCRS

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MAFAERGASN PMLDLNLQVV SSDSVELVTE RLFQFPPIRM ESAGSFNGDL SASTTGDEDS  60
SSNADEAFPF AFGKDCAVQE NLTAKSLCIS DNQRDQTMEL FPLTGGLSSG SSSQKQWLEV  120
SPPEFHYWGG ALERRITAPP GQQQHQPMRK NRRGPRSRSS QYRGVTFYRR TGRWESHIWD  180
CGKQVYLGGF DTAHAAARAY DRAAIKFRGV DADINFNVSD YDEDIKQMSN FTKEEFVHIL  240
RRHSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKYIYL GLFDSEIEAA RAYDKAALKC  300
NGKEAVTNFE PSSYVAEMAS EAAGTADNNQ ILDLNLGIAP PNLCEAQSES IAMFERRAMP  360
ENSVSAAIRS SHSEPYSFAV PSNYHSPWSV SNSSFFPNSR ERATEMRMGV GVGVGSWEWQ  420
IHGHPSGTTS VPLFSAAASS GFPSSSSSSS SSTAIPSASS GVGETHFPAI FYCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	4e-98	AP2 family protein