PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022935072.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 509aa MW: 55930.1 Da PI: 6.5139

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022935072.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.5e-17	160	209	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_022935072.1 160 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 209 78*****************......55**********************997 PP
2	AP2	42.9	1.2e-13	286	336	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a++k +g XP_022935072.1 286 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAALKCNG 336 89******.7**5553..2.26******99********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MAFAERGASN PMLDLNLQVV SSDSVELVTE RLFQFPPIRM ESAGSFNGDL SASTTGDEDS 60 SSNADEAFPF AFGKDCAVQE NLTAKSLCIS DNQRDQTMEL FPLTGGLSSG SSSQKQWLEV 120 SPPEFHYWGG ALERRITAPP GQQQHQPMRK NRRGPRSRSS QYRGVTFYRR TGRWESHIWD 180 CGKQVYLGGF DTAHAAARAY DRAAIKFRGV DADINFNVSD YDEDIKQVGL AKLILITVRT 240 SNSFSNAIDE ELYSWLPLMS QMSNFTKEEF VHILRRHSTG FSRGSSKYRG VTLHKCGRWE 300 ARMGQFLGKK YIYLGLFDSE IEAARAYDKA ALKCNGKEAV TNFEPSSYVA EMASEAAGTA 360 DNNQILDLNL GIAPPNLCEA QSESIAMFER RAMPENSVSA AIRSSHSEPY SFAVPSNYHS 420 PWSVSNSSFF PNSRERATEM RMGVGVGVGS WEWQIHGHPS GTTSVPLFSA AASSGFPSSS 480 SSSSSSTAIP SASSGVGETH FPAIFYCRS

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MAFAERGASN PMLDLNLQVV SSDSVELVTE RLFQFPPIRM ESAGSFNGDL SASTTGDEDS  60
SSNADEAFPF AFGKDCAVQE NLTAKSLCIS DNQRDQTMEL FPLTGGLSSG SSSQKQWLEV  120
SPPEFHYWGG ALERRITAPP GQQQHQPMRK NRRGPRSRSS QYRGVTFYRR TGRWESHIWD  180
CGKQVYLGGF DTAHAAARAY DRAAIKFRGV DADINFNVSD YDEDIKQVGL AKLILITVRT  240
SNSFSNAIDE ELYSWLPLMS QMSNFTKEEF VHILRRHSTG FSRGSSKYRG VTLHKCGRWE  300
ARMGQFLGKK YIYLGLFDSE IEAARAYDKA ALKCNGKEAV TNFEPSSYVA EMASEAAGTA  360
DNNQILDLNL GIAPPNLCEA QSESIAMFER RAMPENSVSA AIRSSHSEPY SFAVPSNYHS  420
PWSVSNSSFF PNSRERATEM RMGVGVGVGS WEWQIHGHPS GTTSVPLFSA AASSGFPSSS  480
SSSSSSTAIP SASSGVGETH FPAIFYCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	4e-91	AP2 family protein