PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022928594.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28207.4 Da    PI: 5.0205
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022928594.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF915.9e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien   rqvtfskRrng++KKA+ELSvLCdaeva+++fsstg+lye+ss
  XP_022928594.1  9 KKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSS 59
                    68***********************************************96 PP
2K-box53.31.2e-1810017525100
           K-box  25 kkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++e  +L+ +  ++ G++L+sLs++eLq+Le+qL +++ +i++kK+ llleq+++ + + + + +en++Lrk+lee
  XP_022928594.1 100 EDEFVKLKLTYMQMRGQELDSLSFRELQNLENQLREGIVSIKDKKESLLLEQLQRCRSQGEVVISENETLRKQLEE 175
                     556677888888999**********************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGRGRVEIKK IENINSRQVT FSKRRNGLMK KAKELSVLCD AEVAIVVFSS TGRLYEFSST  60
SMEHTLSRYR GQGMELDFPR ETLDHPTQVP PSDSDAKSSE DEFVKLKLTY MQMRGQELDS  120
LSFRELQNLE NQLREGIVSI KDKKESLLLE QLQRCRSQGE VVISENETLR KQLEEFQQRN  180
NTPLLESSPL QRSYFSDSKT ASTNETEAET EAEENDCSEI SLHLGLSLDG RQNRKRSVEG  240
TSNDTAGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-55MIKC_MADS family protein