PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022926521.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 306aa    MW: 35936.5 Da    PI: 6.9908
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022926521.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRr+g++KK +ELSvLCda++a+i+fss+gkl+ey+s
  XP_022926521.1 10 RIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCS 59
                    8***********************************************96 PP
2K-box55.52.4e-19861731299
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++ e+l++ l+ ++k +++Lq ++ ++  edL++ +l++L ++e++L++sl+++R++K+e+l++q+e+l++kek+l++en+++ + ++
  XP_022926521.1  86 NDPEELERLLRIMRKDTDELQLSLQRYTAEDLSTFQLRDLDEIENRLQTSLNRVRARKSEVLHQQVENLRRKEKMLEDENEQIYHLIK 173
                     5567777888899********************************************************************9988766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MGRGKIAIRR IENRTTRQVT FSKRRAGLFK KTHELSVLCD AQIALIVFSS NGKLFEYCSQ  60
ATCSMDQIIR RYQIAIGNPI PDQNMNDPEE LERLLRIMRK DTDELQLSLQ RYTAEDLSTF  120
QLRDLDEIEN RLQTSLNRVR ARKSEVLHQQ VENLRRKEKM LEDENEQIYH LIKEQQMAME  180
QQQDVAAAMM MQKRRSEEEE MRIRRPEDHQ HQHQNHHHHH HPHHHPHHGV DQDQAVVCME  240
GDDDDHGNAF GFSNPHIIHP HLQLQLHPHE PNSVLQLGGP LPPPPPPFLH PYRLQPFQPN  300
LHSSTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.29e-50MIKC_MADS family protein